RNA id: TCONS_00027446


Basic Information

Item Value
RNA id TCONS_00027446
length 777
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id XLOC_013673
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49461269 ~ 49669012 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGGGACCGTGATTCTCCTCTCACCACTCCCATTTACCGGCGGCTAAACTGCAGAAACGCGTCCGATCACCGAAAATACGCATCTCGGAAACATACGCgtctcttctttttctttttttttttttgttattctgcatGGGATTAAATCGTCGCAAGGAGGTTGCCTGTGACTTGGGATACTGTTTTGGATGTATCGGGACTTGCAATGATCGCACGGATTAGATTGTgacgctaaaaaaaaaaatggtgagtTTGCGCGCAAGTGTTTTCGCGTTTGTTTCGCGCTGATCGAACGCTCCGCTGTGATGTGGATACTTGTCAAGGACATCGTGCGTGATAAATGAGGAGAAACGACGGCGATGCTGGAAAACACTCTGCTTTTGTGATATTTGGCGATGCTCCTCGGCTGTCAAGTCGTCAGAGAGTTCGTGCGCGCGCTTTGAGGACTATAGGATCCGTCGGACCCGCGAGAGGAGTAAAGTTGAGCTGAGGTTGGATCACAAAACGCAAGattGATTGCTGTATTGGAGCCAATGACTCAATGAGTGTTGTGGATCTGCTGCTTTCGCCTCAGTTTTTGCTGGATTTGATAAGATGGACGGCCTGAAGATCTTTAGACTCGTGGTTCCAGCACTCAGAAGGGACGGTGATGATGAATTTCCGCGAGGGAAAAGCTGAATGCACTGAAGTGTGACGAAACCCCATGACCACTGTCCCCTACAACGAACTCTTCATTATCACAACCCAGAAAACAGCATGATGCTCTTCAGATCAT

Function

GO:

id name namespace
GO:0099504 synaptic vesicle cycle biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027443 lncRNA downstream 333957 49124828 ~ 49127340 (-) True XLOC_013669
TCONS_00027444 lncRNA downstream 334547 49126165 ~ 49126750 (-) True XLOC_013670
TCONS_00027442 lncRNA downstream 335202 49124828 ~ 49126095 (-) False XLOC_013669
TCONS_00027441 lncRNA downstream 335260 49124828 ~ 49126037 (-) False XLOC_013669
TCONS_00026996 lncRNA downstream 339362 49118453 ~ 49121935 (-) True XLOC_013668
TCONS_00027448 lncRNA upstream 128922 49797934 ~ 49877562 (-) True XLOC_013675
TCONS_00027449 lncRNA upstream 281720 49950732 ~ 49964921 (-) False XLOC_013676
TCONS_00027450 lncRNA upstream 284134 49953146 ~ 49964901 (-) False XLOC_013676
TCONS_00027451 lncRNA upstream 284134 49953146 ~ 49964921 (-) True XLOC_013676
TCONS_00026998 lncRNA upstream 388554 50057566 ~ 50061620 (-) True XLOC_013677
TCONS_00026824 mRNA downstream 142474 49309953 ~ 49318823 (-) True XLOC_013672
TCONS_00026822 mRNA downstream 174776 49274629 ~ 49286521 (-) False XLOC_013671
TCONS_00026823 mRNA downstream 174916 49275140 ~ 49286381 (-) True XLOC_013671
TCONS_00026821 mRNA downstream 178239 49273989 ~ 49283058 (-) False XLOC_013671
TCONS_00026820 mRNA downstream 382739 49048067 ~ 49078558 (-) True XLOC_013667
TCONS_00026826 mRNA upstream 371837 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026825 mRNA upstream 371837 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026827 mRNA upstream 374431 50043443 ~ 50083408 (-) False XLOC_013677
TCONS_00026828 mRNA upstream 455285 50124297 ~ 50152689 (-) False XLOC_013680
TCONS_00026829 mRNA upstream 459601 50128613 ~ 50151979 (-) True XLOC_013680
TCONS_00026799 other downstream 1957403 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 3815995 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 4837702 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 4850045 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 5387869 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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