RNA id: TCONS_00027443


Basic Information

Item Value
RNA id TCONS_00027443
length 1827
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_013669
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49124828 ~ 49127340 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCACACATTGTACCAGTGGGAAAGCAGAAACTTCCCGTCCTCTTTTTTACTCCGCTGTTGCATCCATTCCTGCAGGACCCGAAAGAACTGCTGGAAGCTCCAGGCGGCCCCGGTCCGTTCCCCCGACACTCTTTCCTCCGTCTGGTCCAGTTCTGTCAGTCTTCCCACCACCCTCTTGCTTCCTGAAAAAATCTTCAGCGATCCTTGATATCCGCAGCTCAGACGATCCACTGAAGCTCAAAACACCACGCTTGTTGGTTGTGCTGAAGGATGAAACTGTGTGACGGTGGTGTGAAGAGAGAGACGCAGAAACATGTTCATTAATCTTTCACTCCAACAGCAGCCAGTGAAGTCTTTCTGTTTCTCAGGGTTTGACTTGAAGCAGTGCACATCCAAAATAAGTCCAATATCGCCTCAAGATCTTCTCAGTTTTGCCTTAAAGCCGTGCACATCTGAAATAAGTCAAACATTTCTTCAAGAtcttctctgtgtttgatttgaagtcatgcacatttaaaataagaCCAAAATCTCCTCAAAATCTTCTTAGTTTTGCCTTAAAGCTGTGCACGTCTAAAATAAGTCCAGCATCTCCTCAAGATCTTCTTAGTGTTTGTCTTGAGGATGTTCACATCCAAAGTAAGATCAAAACCGCTTCAAAATTTACTTAGAGTTTGATTTGAAGCCGTGCACATCCAAAATAAGTCCAATAACTCCTCAAGATCTTCTCAGAGTTTGTCTTGAAGCTGTTCACATCCAATTTAAGACCAAAATCTTTTCAAAATCTTCTCAGTGCTTGTCTTAAAGCCGTGCACATACAAAATTACAATGGCAAGTCCAAAAATCTCTTCAAAATATTCCCTGTTTGCCTTAAATTGGTGCACATCCAAAACAAATCCAAGTGCCCTTGATGTTGTTGTATAGACTGTGCACatccaaaataacaacacatcCAAATTCTGTGCAAAATCTTCTCAGTGTTTGATCTGAAGCCGTGCACAcccaaaataaatgcaaaatctcTTCAAAATCTTTTCAGTGTTTGCCTTAAATCTGTGCAAATCCAAAATAACTAGTCCAACATCTCTTTAAAATCATCTTAGGGTTTGATTTGAAGCTGTTGTCCAGATTGtgcacatccaaaaaaaaaaaaacaccaaaagtCCAAAATCAGTCTCTTTAAAATCTTCTCAGTGTTTGTCTTGAACCAACTCCCAAATCTCTTTCATATCTTGTTTGTGTTTATCTTAAAGCTGTGCACATCCAAAATGTGTCCAAATCCTCTTCAAAATCTTCTCAGTGTTTGCCTTGAAGCTGTTGTCCAGATTGTGCGCATCCGAAATAAGCACAAGTCGAGAAATCTCTCTGCAGAAATCAGCCTGTTGTCTCCTGTATCGCGACAGCAAACTGGTGCTGGAATGGAAAACGGGTCGACTTTCAATTGGAAATGATAAAGATTAAAGCGTGAAGTTGGAGACCAGATGGAAAGGGCCGCTTTGGAGGTCAGAGGCCAAAAAGCAGTGTGTTTATCCAGacgagagagaaaaagagagctgCTGTGAAGGAGAGAGGACGCTTTGTGCTGGCTTTAAATATTGAGATCCCGTCTGACACAGTGTTACAGCATCCACAGTCAACGTCCGGAACAATTCCAATCCACAAATATCCTGGATTTGCCtttaaagtttctcttttggATTGAGAATGTGTGCTCGGTGGTTATTTTCGCTCCTGTTTTGAAGTGCGCTCAGGTCTTTCCTCCAGACTTCATATTTTTGTCTGGCATCTTCCCTCGTAAGCTCTCAGTGTTGCTCAGAACCGctcac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026996 lncRNA downstream 2893 49118453 ~ 49121935 (-) True XLOC_013668
TCONS_00027440 lncRNA downstream 173106 48951009 ~ 48951722 (-) True XLOC_013665
TCONS_00027439 lncRNA downstream 437110 48571907 ~ 48687718 (-) True XLOC_013662
TCONS_00027438 lncRNA downstream 437237 48571907 ~ 48687591 (-) False XLOC_013662
TCONS_00027437 lncRNA downstream 931742 48186556 ~ 48193086 (-) True XLOC_013655
TCONS_00026997 lncRNA upstream 333929 49461269 ~ 49510853 (-) False XLOC_013673
TCONS_00027445 lncRNA upstream 333957 49461297 ~ 49518885 (-) False XLOC_013673
TCONS_00027446 lncRNA upstream 333957 49461297 ~ 49669012 (-) True XLOC_013673
TCONS_00027447 lncRNA upstream 422234 49549574 ~ 49551498 (-) True XLOC_013674
TCONS_00027448 lncRNA upstream 670594 49797934 ~ 49877562 (-) True XLOC_013675
TCONS_00026819 mRNA downstream 8446 49020880 ~ 49116382 (-) False XLOC_013667
TCONS_00026820 mRNA downstream 46270 49048067 ~ 49078558 (-) True XLOC_013667
TCONS_00026818 mRNA downstream 46400 49002776 ~ 49078428 (-) False XLOC_013667
TCONS_00026817 mRNA downstream 104762 49001425 ~ 49020066 (-) False XLOC_013667
TCONS_00026816 mRNA downstream 132465 48983506 ~ 48992363 (-) True XLOC_013666
TCONS_00026821 mRNA upstream 146649 49273989 ~ 49283058 (-) False XLOC_013671
TCONS_00026822 mRNA upstream 147289 49274629 ~ 49286521 (-) False XLOC_013671
TCONS_00026823 mRNA upstream 147800 49275140 ~ 49286381 (-) True XLOC_013671
TCONS_00026824 mRNA upstream 182613 49309953 ~ 49318823 (-) True XLOC_013672
TCONS_00026826 mRNA upstream 913509 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026799 other downstream 1620934 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 3479526 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 4501233 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 4513576 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 5051400 44065033 ~ 44073428 (-) True XLOC_013607