RNA id: TCONS_00026821


Basic Information

Item Value
RNA id TCONS_00026821
length 1875
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_013671
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49273989 ~ 49286521 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGAGCAGAAGAGAGCACCCTCAGAAACATGCCTCAAACCTTTAGACTAAAACATACTTCAGATGAGTAACAAATTAAGTATGGAACATAACCCCGACTTTGGAAGGaaatctttctcttttttttggcaaatatttgaccTGCGTTGCTGTTTTGCGCAAGCAGTTAGAacatcacgcacacacacactcacacacacacacacactaacagcaGACTTGTCAACTGCGCGCTCTGCAACCTGTAGAACCGACTAAAAGAAGACAAAACATACATAAAGGAGAGGAATATGCAAAGACACGCAGGCGTTTGTGAGCTCCGGATGTTTTGCAGAAATGGATCAGTTTCAGAGCGTCATACCTGAAAAACTCCGTGGATTATGACTGTTCATCACTTCTGTCGGCATGTGTTCGAGAGGGAAATATGAACTCCTCGAAAGTGAATCAGAAGCCAAGCCTTCGAGCAAGAGGATTAGTGCCCTGAAGATCTTCTACGTCATCGGCTTTGTATCAGCGTTCACCTTCATCGCCTTCATTTATTTCCAAGACTTCGCCCAGAATGCAAGCTGGCAAACCTACGAACCCAAGCCCACAGACGCTCCCCCAACAAACCGAACATTCCTCGAGGAAGCACCTACGGCCTGCGGTGTTATAATAAACGAAGGGCCTATGATTAAAGTGGGCGATCTAAACACATACGTGACCGGCTCTTATATGGACCACCGTTTCCGGGAGGTTAAATCAATTGCGATTGTTAATCGGCAACAATTAGTGACGTATTCATGCGTGCTATGCTGTAATGGGAAAAACGTGACCACGTTAGCGCATTACGCTATTCATTCAGACCACTTCGGTTTTGAATACGGCACAGCCACTATTGCATGCCCATTAAATGACGAGTGTTTAAAACCAACGCATGTTGCTTTAACATCATCAGCCAATCACTCTGAAAGCATCACATCATTCCAAAGCATCATGAATAGAGACGTTCCTGCGGCATTCCCACATCAGTTCACCGTCTGCATCTCTGTCATGTACGACTATACGAACGTTCTCAATCTAGTTGAAGCAATGGAGATGTTTCGACTTCTCGGCGCAACAAGAGTTGCGATATATCGAACGAACTGCGATTCGAACGTGCAGAAGGTTTTGGATTATTACGTAGAGCGAGGATTCGTCGAAGTCATCCCGTGGACTATTAAAAAACACGTCCAAGTGTCTAGAGGATGGAGGAAGGACGTATCAGGAGGCGAGCTGCACTATTACGGACAGATTCCTGCACTGAACGACTGCGTTTATCGATATATGTACCAAAGCCGATATGTGGCTCTACATGACATGGATGAACTCATTTTACCTTTCGGTGTGAAAACGTGGACGGAGATGTTGCCGAATTTGGAGAAAATGTACGGGACTACCTTTGGGTTTGAGTTCGAGAACAACCAATTCCCTTTCACATCTAAAGCCAATAGGAGATATGATGTAAACGATTGGGAGAGCGTACGGGGAACTAATATACTGAAATACATCCAGCGAGTGCCCAATGATCCCAAcgcttttaataattttaaggtgATTGTGAACCCGCGGCTGGTTCTGATGGCTACTGTACATGGCTTGCTGGATACTGTGAATGTCGGTAAGCACACGGTCAGGGTAAACAGAAATGTCGCTCGAATGTACCACAGTAAAAACTTAACATATCCGCTGAACACAAATCTCATCCCCGATAATCATCTCTGGGATTATGCGGATGAGCTGATACCTGCGGTTACTAAAGTTTTACAGGACTGTGGGTTCATTACGGGTTAGGCTTTACTGCACTGAGGTGTTGCTGTCAaagattattaataaaatacGATGTCAAAACAGTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5337 Predicted to enable hexosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000076554

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027443 lncRNA downstream 146649 49124828 ~ 49127340 (-) True XLOC_013669
TCONS_00027444 lncRNA downstream 147239 49126165 ~ 49126750 (-) True XLOC_013670
TCONS_00027442 lncRNA downstream 147894 49124828 ~ 49126095 (-) False XLOC_013669
TCONS_00027441 lncRNA downstream 147952 49124828 ~ 49126037 (-) False XLOC_013669
TCONS_00026996 lncRNA downstream 152054 49118453 ~ 49121935 (-) True XLOC_013668
TCONS_00026997 lncRNA upstream 178211 49461269 ~ 49510853 (-) False XLOC_013673
TCONS_00027445 lncRNA upstream 178239 49461297 ~ 49518885 (-) False XLOC_013673
TCONS_00027446 lncRNA upstream 178239 49461297 ~ 49669012 (-) True XLOC_013673
TCONS_00027447 lncRNA upstream 266516 49549574 ~ 49551498 (-) True XLOC_013674
TCONS_00027448 lncRNA upstream 514876 49797934 ~ 49877562 (-) True XLOC_013675
TCONS_00026819 mRNA downstream 157607 49020880 ~ 49116382 (-) False XLOC_013667
TCONS_00026820 mRNA downstream 195431 49048067 ~ 49078558 (-) True XLOC_013667
TCONS_00026818 mRNA downstream 195561 49002776 ~ 49078428 (-) False XLOC_013667
TCONS_00026817 mRNA downstream 253923 49001425 ~ 49020066 (-) False XLOC_013667
TCONS_00026816 mRNA downstream 281626 48983506 ~ 48992363 (-) True XLOC_013666
TCONS_00026824 mRNA upstream 26895 49309953 ~ 49318823 (-) True XLOC_013672
TCONS_00026826 mRNA upstream 757791 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026825 mRNA upstream 757791 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026827 mRNA upstream 760385 50043443 ~ 50083408 (-) False XLOC_013677
TCONS_00026828 mRNA upstream 841239 50124297 ~ 50152689 (-) False XLOC_013680
TCONS_00026799 other downstream 1770095 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 3628687 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 4650394 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 4662737 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 5200561 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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