RNA id: TCONS_00026828


Basic Information

Item Value
RNA id TCONS_00026828
length 6757
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_013680
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 50124297 ~ 50152689 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGAGGCAAACGGTGAATTGCAACAGGCAGTCGTCTCCAGAGAGAGAGTCTGAGAGCAATGCTCAGTCCACTGACAACAACTCAACATCCGGACAGAAAGACAGAGGGAGCTTTTTCATTCAGAAATCATCTGCTTTGCTCAAAGCCATGCCTGCAACATATACTGAAACCAAGGACAAAGTTTCTTCAATGCATGTAGTCTGATCTGACACTGCGAGTCGTCAACGCATTGCCTTCTATAACCTGCCCGATCAAAGGATTCAATCTGGAGCTTCAACTTGTTTCATTAGTCTTCTCAATATGACACTGCGAGACTCAATGCATTGCCTTTTTTAACTTGCTGGACTAACAATTCAGAGCTTTCACTTTGTTTATAAGTCTTCTCAATATCTTGCCTGTTGCTTTTAGTCTGATTTGACACTGTAAGTCTTTAATGCATTGCCATCCTTAACTTGCTGGATCAACAATTCAgagctttaattattttattagtctTCTGAATATCTAGCCTGTTGCTTTTAGTCTGATTTGACATTGTGAGTCCTCATTTTTAACTTGCTGGATCAACAGTTCAGAGCTTCGCCTTCTTTTATTAGTCTTCTGGATATCTTACCTGTTGCTCTTAGTCTGATTTGACACTGTTAGTCTTCAATGCATTGCCATCTTTAACTTGCTGGATCAACAATTCAGAGCTTTAACTTCGTTCTTTAGTCTTCTCAATATGCTGCATGTACTTTTGATGAGCTTGTGGGTATTAGGAAGTGTAACGGGACAGTCCCAATCTCAACCCGACGACACAAACCCATGGAGGCAGATGATCCAGTGGGAGAATAATGGACGTGTTTATAGTCTACTCAACAGCGGAGCCGAATACGTCCCGGCTCGGAACCAGGAACGGGATAGGAACCATCGAGTGCTTCTTGCTGACGCTCCAAATCGTAGGTCACAGGGTGGAAATGTGCGAAGACAAGCACCCTCAAGAGGGAGCTCGGAGACGGTGAGGGGTCAAGCCAGACACCCGTTTGGATTCGGACAGGTGCCGGAAAACTGGCGGCAGCAGCAAGGTGCGGTGGGAAGAAGCGAAACAAGTCGATTTCAGTCACAAACCGGCTCTCGTTATAGACCGTCATCTGGAgcatcatcatcagcatcatcatcatatCCTCAATATCCAATCCCGCAACAGCCTCCGTTCGGTGCTCCGTATGACCAagACAGGTCATATGAACCTCCATTCCTTGGGACGGGGTATTCGGCAGGCACGGGTGGAGGTTTAGGTGGAGGTGGTTATGGAGGATATTCTACAGGCAGTTTCGGTGGAGGAAATCCTGCAAATGATGATCGATATCGATTTTATCCACCGTACGGTCAACAATACCAGGCTGTTCCAGCCCAACCTGCACAGCCACCGTTCTCTGACGGTCTGGaccacagatacacacacagtcTGTTCAATGAGGATAATCCTGCAGTTCCTAACGGTGCTTCAAGCAATACGGGCTCATCCTTTCAGCCTGCGGTGCAAAGTCCACAATATGAACAGTTTCCGCCGTACGGAAGGCCTCAGCCGCAGCCTCCATTTCTACAACCAGCGCCACGAAACCCGCTGGTCTCCAACACTGCAGAAAACCCCAACATCAATGTAGGCAGCGTTTATCGCCCTCAACAAAGAGGTTTGCCTGACCTGGTTCCTGACCCGAATTACGTCCAGGCCTCCACATACGTCCAGAGAGCCCATATGTACTCCTTACGCTGTGCTGCAGAGGAGAAATGTTTGGCCAGCTCTGCCTATAATGCTGAAACCACAGACTACAGTGTTCGAGTTCTGCTGCGTTTCCCTCAGCGGGTGAAGAACCAGGGCACGGCAGATTTCATGCCCAACCGGCCGCGACACACCTGGGAGTGGCACAGCTGCCATCAGCATTACCACAGTATGGACGAGTTCAGTCACTATGATCTGCTGGAGGTCAGCAGTGGCCGAAAAGTGGCGGAGGGACACAAAGCCAGCTTCTGTCTGGAGGACACGACCTGCGACTTCGGCCATCTGAAGAGATACGcctgcactgcacacacacagGGTCTCAGTCCGGGTTGCTTCGACACATACAATGCAGATATCGACTGCCAATGGATTGACATCACTGATGTTCAGCCAGGAAACTACATACTGAAGCTCCAGGTCAATCCAAAGTACTTGGTGCTTGAGTCGGACTTCACCAACAATATAGTGAGGTGCAATATCCACTACACAGGGCGCTACGCCAAGACCACAAACTGCAAAATCTCCCAGTCATGATGTGTCAGATGTGGATGAATGTCCATGTAAGCGCTGTTCTATTGCAATGTGAATGGAATTCCTGACGTCGCTGTGATCGTTTATTGTTTTTGTCCTGGCTCCCATTTATGTGCTGTTCTTGTGAACCTGGGTTCAGCTCGTGCCAAGAggaacaagcacacacacacacacacacacgcacacacatacactgaggaATCCCATACTTCACATCATGCAGCAATGTCTATTTTCTTTCCAGGCACCCCATTAACCCTGCTTTTTCATAAAAACACACTCTCGCTGCCCTCAATTAAGTCTAATTCCTGCACTTATTTAAGTGGGTTTCATTGCTGGAATGCAAAGTGAGAGCGGGTATGGCACTATTGACCTGCAGTTCTGTAATTTAGATCAGGAAAATCAGCAACTGGAAACAATACTCTTATTTTTTTCAAGTCTCTCTCTTTGTCCGTGGCACTGAATTAAGGCCTACTCAAGCAGGTATGTCAGGCATCATCCAGCTAACTAAGAATAAAGGGTTTTAGTTAAAATGAAAGGCTTGGAAAACATAAATGGCTTTGGAATTAAAGCacattgaaaataaaagccttgaaAACAAAAGCTGGAAGCTTTATATTGAGATGATTGTACTTATACCATGTCCAAACATGCTAACTTTCTTAGAACATGTCAGCAAAATCTTAAAACATGTTACAAATGCaacaaaaacatgctagcaatttgACAAAAGTGCTAGCACTAACATGTCATGACTAACTAAATGGCAATggcaatgtgttaaaacatgttggCAGATAAAGTTTGAAAGCATCTtgtcatgctaaaacatgctagccaAGGATTTAAACATGATAGTGAACAAAACATACAAACTGCTTCATAAAGCCTATTAGCAACAtcttaaaacatgttagcagagtgctaaaacatgttagcaatgtgaaaaaaatatgctGACAATTTCCTAAAATATATGCATAACTTCCTATCTTTCATCAATTAGCAATATGTCAAAAAGAGTTAACTTGAAATTTGCTAGCTCCCTACtttattaaaacatgttagcattaACCTAAACATTTATAACTGCTTTAAGCAGTTTAGCAGTGTGTTCAAACATGTTAGTATATTGAAAGACACGTCAGTGTGTTaactttctataaaaaaaaaaatatgagtaCCTTGTTAAACATGCTAGTAACTTGACAAAACTGCTAACAAAGGATGCTAAAACATTCCAACAAATGCCAACATGAACAACATCCAGAAATTTAGTAATATCTTGTCAAAACATGCTATCATGCATGTTAGCAATATGAGGAAAAGAAACCTGTTACTAATGTGACAAAAACATGCTAGTAATTTGTTAAAGCTAACACTAACATGTTCTAACTAAAACAGGCTGGCAATGAGTTAAAACATGTTAGTGGATAGAGTTTGATATGATCTTGTCAGGCtaaaaaaacatgttagcaaaGGGTTAACACATGATAATgaacaaaacatgcaaactacTTCATAAAGCCTACTTACAACTTCCTAAAACATGTTAGCAGAGTGGCTAAAACTGCTTAAACGGGTTAGCAATGTGTTCAAACATGTTAATAACTTGAAAGAGAATTCAAAGTGTGCTaactttcttttaaaaacattagcaTCTTGTTAAACTTGCTAGTAGCTTGACAAAACTgctaaaaacaaaatatcaacatgaGCAACTTGAAACTTGGTAGCGTATTGTCAAAAACATGCAAGTAGTTTGAAAAAACTGCTAGAAAAAGGTGCTAAAACATACCAAAAAGCTACCAAACATGACCATCAACTTCCTGAAATTTGGTAGCATCTTGTCAAGACATGCTAACTTATGTTAGCAATATGAGAAAACATGTCAACAACTccctaaaacatgttaaaaatctTGTTGTGCTACAACATGTTACTCACTCTTATAACATGATTGCTTTCTAAAACTTGTTAGCTAAGTGCTAAAGCATGTGCCTAACTGGTTTTAACATGCTATCATTCCAGAAACATGCCAGCAACTTttttaaacatgctagcaataaGCTAAAATATGCAATAAGCTTACAAATGCTAATCTAAGTGAAGGTTAAGTGGGGTCATTTTTACTCCTTTTAACTTCATTTTTCTTTGGTGTAACCACATGCCcaaatgaaaaaatactatagtaatttagagTAAATATTAGTGTTTTCGAACCAAACTAAAGTGAAGTACTTTAAATAATCTGTTCTGGGAAATCTATTGTTGccatggtaacaaaacaactacagtaattaatctgttgtggtgattctaaagttgctatggtaacacaaggaCTACAGTAGTTTGTCTGATGTGGTGATTccatggttgctatggtaacacaacgactatagtCATTGATCTgatgtggtgattctgcagttgctatggtaacacaaccactatagtaaGTGATCtgctgtggtaattctacagttgccatgatGACACAGCAACTATAGTAACAAACTAATTCCCCAATACTGATGTTTACTATAATATGGTTCAAAATCAGTAATATTAGCATTTGCATTTGGCAGTTCAAACCATTTTAGGTTACATGAATAACAATTTTAACCAGTTCTTGCATTCCCTAACAGTCAAACCCACTTCACTTGAGCTGTTCTATTGTAGTATTGAGTTCTGATCTAATCTAATACTGAACTCAGGATAATTCCCTCGGCTGTGAGATTAGTACTGTGTGAACACTGATGTGCATGTTGGAACCCATCTATATTTTCTTTATCCACCAACACTGGTCAGCTGCCACAGGTTTACGCTTCATATCACCCGGTTAACCCACCGATGCATGACTTTAGCTAGGTAAAAGTGCCTTTATTTTATCATAATGCAATCATACCAAGTGTTCTTATGTACTGTCCTGGAGGGAAATGCTGTACTTGCGGTGTTACGCTCCAGAAactcactgcaaaaatgctttttattaagagttttcgtcttgtttctagtccaaatatctgaaaatgcctaaatcaagaagcattttctagacaagctaaTAATAATCTgcttactaaaaataataaaataataatctgccAACGGGGGAAGCAAAATAAACCATTGCTTTGAAATAATTATtgcaaattattttgcttgttttaaggaaaaactcactaaGTTTTAACTCTATTTCCGAAAACAACTTAATATTTTGTGCTTGTCTagacttttattaatttttttttttttttttgcactagaaacaagacaaaacaccTCTATGAAAAGCCTTTTTCATATCTAAAATTAAGATTAATGTCTTGATTTGTTAAAGGGGGAAACAGATTTAGATGATACTACTGTTGCTAAACTGACATTGCATAACTTGATGTTACTGACGATCGTAATACCATCCGTACCTACCTCGTAAAGAGAGACAAATACAGCTCCTTATTACACTACACTTGAAGAGCCGGACATGACAAACATCCATCCGCCTGCATATCTTGGGGATTCTAGAATTACGGGTACATTTTGCACATCCAAGACAAACTTTTCCTTCCTTCGACTTAAttatcaccacagcggaatgaactgccaactattccagcatatgttttatgcagcggatgcccttccagatgcaacccagttctggcaaacacccatacacactcattctcacacacacttatacactatggccattttagtttcttcagttcacctatagcgcatgtgtttggactgtggaggaaactctTAAAGTAACAATTAGCAACAGAATCAAACGTTCACTCTCATATGTAAGCATTGTCTTTCATTACTAACAGATTCATTTTATTAAGCTAAAGCACAAAACTGTGGAAAATGTCATGGATTAAACGTTTAACAATAAGTTTAACAACAATTAGTAACAGAATCAAATGTTCCCCATCACAACTAACCATGGTTTTACATTAGCAATGCATTCAGTTTACTGTAAACTATACCTTCATTGTACATTAAGACAGATGAATGGATCCTGCTTGAAATGTACCCGTAATCCTCATATGAATCGCATGCCGCAATATCAATAAATGCACAGGACACATGTAGCTTCTGCGAGGCTATGTGGGATATGCTGTGTTGATGCATTCAGCCTGAAATCAATCCCAGTTTGTTTATTTCATGCTACAATCTGGGAACAGTGCTTTTGTCTATTATCCAGATCCAGACGTAATGCAGAACAGACCTTGTTTTATCGGATCTCTTTATACCCTGTATAAATGATTATTGTAACGTTGTTTATAGTCGACGGTTAATTTGCATCTGGTTGTGATCTGGTTTTGTGGTTCAACACAGGTGCACGTATCAATCATTGTGGCTTTTTTATTGTCTGTGCTCCGAATCATCTGTCTTAGAGTTCATACTGGATCTTTCAATAAAGGCTGAAGTGTATACCAGCT

Function

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030903 notochord development biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-693 Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in hypochord and notochord. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; exfoliation syndrome; and primary open angle glaucoma. Orthologous to human LOXL1 (lysyl oxidase like 1).

Ensembl:

ensembl_id ENSDART00000006078

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027452 lncRNA downstream 19044 50095239 ~ 50105253 (-) True XLOC_013678
TCONS_00027456 lncRNA downstream 24144 50098534 ~ 50100153 (-) True XLOC_013679
TCONS_00027455 lncRNA downstream 24152 50098534 ~ 50100145 (-) False XLOC_013679
TCONS_00027454 lncRNA downstream 24153 50098534 ~ 50100144 (-) False XLOC_013679
TCONS_00027453 lncRNA downstream 24164 50098534 ~ 50100133 (-) False XLOC_013679
TCONS_00026830 lncRNA upstream 200316 50353005 ~ 50435268 (-) False XLOC_013681
TCONS_00027457 lncRNA upstream 206971 50359660 ~ 50370537 (-) False XLOC_013681
TCONS_00026831 lncRNA upstream 276917 50429606 ~ 50436282 (-) False XLOC_013681
TCONS_00026841 lncRNA upstream 553787 50706476 ~ 50707287 (-) True XLOC_013684
TCONS_00026999 lncRNA upstream 687838 50840527 ~ 50841349 (-) False XLOC_013687
TCONS_00026827 mRNA downstream 40889 50043443 ~ 50083408 (-) False XLOC_013677
TCONS_00026826 mRNA downstream 40892 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026825 mRNA downstream 40892 50040849 ~ 50083405 (-) False XLOC_013677
TCONS_00026824 mRNA downstream 805474 49309953 ~ 49318823 (-) True XLOC_013672
TCONS_00026822 mRNA downstream 837776 49274629 ~ 49286521 (-) False XLOC_013671
TCONS_00026832 mRNA upstream 281033 50433722 ~ 50523399 (-) False XLOC_013681
TCONS_00026833 mRNA upstream 290784 50443473 ~ 50524017 (-) False XLOC_013681
TCONS_00026834 mRNA upstream 349657 50502346 ~ 50524042 (-) True XLOC_013681
TCONS_00026835 mRNA upstream 383513 50536202 ~ 50766660 (-) False XLOC_013682
TCONS_00026836 mRNA upstream 386683 50539372 ~ 50579629 (-) False XLOC_013682
TCONS_00026799 other downstream 2620403 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 4478995 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 5500702 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 5513045 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 6050869 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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