XLOC_013664 (tirap)


Basic Information

Item Value
gene id XLOC_013664
gene name tirap
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48753162 ~ 48755037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026814
ATGGAGGAAAAGCGTGTCAGCGGCGTCATGAGCTGGTTTCGTGAGCGTTTTGGCAGACAAAGGAACGGACAGGAACAAATCAACCCATATGaaaaccctcctcctccttctcacCCATCAGATCTCTCCATCTCCACCTCCATctgctcctcttcctcctctcaTCAGCATCTGCCCTCATTTCTCTCCTCATCCCTCCGCTCAGCTCTCAAATACGACCTCTATCTGTGCCACTCCGAGAAGGACATGGAGCAGGCGCAGAGTTTGGCCACTTTCCTGGAGCAGCCGGGTAAAAGTCTGCGCTGTTTCCTGCAGGAGCGCGACTGTGCGCTGGGCGGCGCTGTTTCCACTGAACTGCTGCAGGCGCTGCGGGATAGTCACTGCTGGCTGCTGCTCATAACTCCACACTTTCTGAAGGATGATTGGTGTTTGTATCAGATGCACCAGGTCCTGTCTGAGGGCCCGATGTCTCAGAGGATTATCCCCTCCGTGCTGGACATGCCCAGGTCTGAGCTGCCGCTGGAACTGCGCTTCCTCTTCACTGTGGATCTCAATGTAAACAGAGAGTTCGGCTTTAAACAGGTGTACAGTACTGTACTTCACTGTAAGTAG

Function

symbol description
tirap Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human TIRAP (TIR domain containing adaptor protein).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04620 Toll-like receptor signaling pathway
ko05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
ko05161 Hepatitis B
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05133 Pertussis
ko05152 Tuberculosis
ko05417 Lipid and atherosclerosis

ZFIN:

id description
ZDB-GENE-040219-4 Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human TIRAP (TIR domain containing adaptor protein).

Ensembl:

ensembl_id ENSDARG00000074371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026814 True 612 mRNA 0.54 2 48753162 48755037

Neighbor

gene id symbol gene type direction distance location
XLOC_013663 st3gal4 coding downstream 7645 48696094 ~ 48745517 (-)
XLOC_013662 NA coding downstream 65444 48571907 ~ 48687718 (-)
XLOC_013661 kcnj1a.1 coding downstream 194742 48542900 ~ 48558420 (-)
XLOC_013658 kcnj1a.2 coding downstream 222941 48498366 ~ 48530221 (-)
XLOC_013665 NA coding upstream 195972 48951009 ~ 48951722 (-)
XLOC_013666 FO681288.3 coding upstream 224086 48979123 ~ 48992363 (-)
XLOC_013667 BX663503.3 coding upstream 246388 49001425 ~ 49116382 (-)
XLOC_013668 NA coding upstream 363416 49118453 ~ 49121935 (-)
XLOC_013669 NA coding upstream 369791 49124828 ~ 49127340 (-)
XLOC_013384 BX323829.1 misc downstream 29210931 19542102 ~ 19542231 (-)
XLOC_013655 NA non-coding downstream 560076 48186556 ~ 48193086 (-)
XLOC_013654 NA non-coding downstream 845493 47906641 ~ 47907669 (-)
XLOC_013653 NA non-coding downstream 867076 47881952 ~ 47886086 (-)
XLOC_013652 NA non-coding downstream 875283 47874535 ~ 47877879 (-)
XLOC_013670 NA non-coding upstream 371128 49126165 ~ 49126750 (-)
XLOC_013673 NA non-coding upstream 706232 49461269 ~ 49669012 (-)

Expression


Co-expression Network