CI01000029_04253844_04257502


Basic Information

Item Value
gene id CI01000029_04253844_04257502
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4253726 ~ 4257678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04253844_04257502.mRNA
CCATAAAACACGTGCCCACCCCCCTGCCCACTGCAGTGTCGGACGCGAGGGGTAGGGGGCGCACCTGCTGTAGGTCTGAGGCTGGAGGTTACCTGGAAGGCGTCTGGGCACATCGCTGATGGAGGGCAGCCCCGTGGCCCGGCTGGACGAGAGTGGAGTGGTGGAGTGCACAGAGGGGGAGGCCATGGGACTCAGGTATGATGGGTACGTCTGGTCATATGACCAAGGTGTGAAGGAGTTGGGGCTGCTAAGCGAGGGCCGTGGAGTTTGCGTTGGCACAGTAACCCGCATGGTGGTCTGCCGGATACGCTCCAGTTCACTGAGACGGTCGGAGAACAGTCCGGCCTTCGGGCGGGGATTTGGCTTTGACAATGAAGTGCTATGCTTGGCATATAACAACATTCTGTTGGCACACATTAAACACTCAACCTTCCCAGACAAGACGAAACCCTTATAATACAAGACCGTATGTGCTTTCTCTGTGTAGGATGCATGATGACACTGGCCAGCACCTTTCTGGAAAGCTATAACAGGAGCGTTTAAGAGTCTATAGCCTCAAGTCTATTCTCGGCAAATTAGAGGAGGGATAAGACAGCAGCGCGGCCCAATACACAACTAGCCCCTTTTTCCACA

Function

NR:

description
Runt-related transcription factor 2a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04253844_04257502.mRNA True 633 mRNA 0.55 3 4253726 4257678

Neighbor

gene id symbol gene type direction distance location
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding upstream 21417 4223544 ~ 4232309 (+)
CI01000029_04213048_04215977 NA coding upstream 37416 4213048 ~ 4216310 (+)
CI01000029_04143243_04143794 NA coding upstream 109675 4143243 ~ 4144051 (+)
CI01000029_04099307_04107542 LIN9 coding upstream 146179 4099307 ~ 4107547 (+)
CI01000029_04076167_04079831 NA coding upstream 173762 4075796 ~ 4079964 (+)
CI01000029_04389599_04399047 OPN8A coding downstream 131921 4389599 ~ 4399065 (+)
CI01000029_04409794_04419021 OPN8B coding downstream 152116 4409794 ~ 4419021 (+)
CI01000029_04478628_04483582 NA coding downstream 218742 4476420 ~ 4483601 (+)
CI01000029_04521600_04521771 NA coding downstream 263922 4521600 ~ 4522751 (+)
CI01000029_04590418_04605290 NA coding downstream 332606 4590284 ~ 4605694 (+)
G153605 NA non-coding upstream 111605 4141904 ~ 4142121 (+)
G153602 NA non-coding upstream 118219 4124759 ~ 4135507 (+)
G153600 NA non-coding upstream 133505 4119885 ~ 4120221 (+)
G153598 NA non-coding upstream 134801 4118531 ~ 4118925 (+)
G153589 NA non-coding upstream 180092 4073193 ~ 4073634 (+)
G153645 NA non-coding downstream 1640 4259318 ~ 4259607 (+)
G153646 NA non-coding downstream 2232 4259910 ~ 4260205 (+)
G153647 NA non-coding downstream 2623 4260301 ~ 4260539 (+)
G153649 NA non-coding downstream 7269 4264947 ~ 4265213 (+)
G153651 NA non-coding downstream 10069 4267747 ~ 4268078 (+)
G153475 NA other upstream 691722 3545125 ~ 3562004 (+)
G152451 NA other upstream 1490787 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2725827 1526754 ~ 1527899 (+)
G151495 NA other upstream 3881804 366541 ~ 371922 (+)
G151415 NA other upstream 4028481 170521 ~ 225245 (+)
G153790 NA other downstream 475911 4733589 ~ 4740107 (+)
G154587 NA other downstream 1013342 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1199563 5461497 ~ 5470346 (+)
G155079 NA other downstream 2025007 6282685 ~ 6288398 (+)
G155083 NA other downstream 2173857 6431535 ~ 6490294 (+)

Expression


Co-expression Network