CI01000029_04409794_04419021 (OPN8B)


Basic Information

Item Value
gene id CI01000029_04409794_04419021
gene name OPN8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4409794 ~ 4419021 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04409794_04419021.mRNA
CAATTCTTTCCATTGTGGGAAATTTGATGGTTCTTGTGATGGCGTATAAGCGGTCAAACCACATGAAGCCCCCGGAGCTTCTAAGCGTGAATCTTGCTGTGACAGATCTGGGAGCGGCCGTCACAATGTACCCGCTGGCTGTAGCCTCAGCTTGGAACCACCATTGGATAGGGGGAGACGTCACCTGCGTGTACTACGGCCTAATGGGATTTTTCTTTGGAGCAGCTAGCATGATGACCCTGACAATTATGGCTATTGTTCGCTTCATCGTGTCATTAACGCTCCAATCACCCAAAGAGAAAATCAGCAAAAGGAACGCACAAATCCTTGTGGTAACCACATGGCTGTACGCGCTACTCTGGGCTATATTTCCTCTGATTGGATGGGGAAAATACGGCCCAGAGCCTTTCGGCCTGTCCTGTACTCTGGCCTGGAGGGACATGAAGGAACACAGCCAGTCTTTTGTCATCACCATCTTCCTCATGAACCTCATCTTCCCAGCCATCATCATCATGTCGTGCTACTCTGGTATCGCTCTGAAACTATACGTCACCTACAAGTCTATGGATGACAACAACCACATACCCAACATGATAAAGATGCAGCGGCGGCTCATGGTGATCGCTGTGTTGATCAGCATTGGGTTTGTCGGCAGCTGGGCACCATATGGCATCGTTAGCCTGTGGTCCATCTACCGGCCTGATGATTCAATCCCCCCTGAGGTCAGCATGCTACCTTGTCTGTTCGCCAAGACGTCCACTGTATACAACCCGTTTATCTACTATATCTTCAGCAAGACCTTCAAACGAGAAGTCAACCAGTTGGGCCACCTCTGCGGGAGATCCAACATCTGCTGTACATCCGATGCCAAAAACAGCCCGGAGAATACTATCTACCTGGTGTGCGCTGCGAACAAGTCCAAACCTGAAGCAGTGGAGCAATCATTAGAGAAGTGCAGGGAGAATGAGACTCAACTGATGACGAATCAGCAAGATCTGTGA

Function

symbol description
opn8b Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; liver; and testis.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04409794_04419021.mRNA True 1001 mRNA 0.50 3 4409794 4419021

Neighbor

gene id symbol gene type direction distance location
CI01000029_04389599_04399047 OPN8A coding upstream 10729 4389599 ~ 4399065 (+)
CI01000029_04253844_04257502 NA coding upstream 152116 4253726 ~ 4257678 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding upstream 177485 4223544 ~ 4232309 (+)
CI01000029_04213048_04215977 NA coding upstream 193484 4213048 ~ 4216310 (+)
CI01000029_04143243_04143794 NA coding upstream 265743 4143243 ~ 4144051 (+)
CI01000029_04478628_04483582 NA coding downstream 57399 4476420 ~ 4483601 (+)
CI01000029_04521600_04521771 NA coding downstream 102579 4521600 ~ 4522751 (+)
CI01000029_04590418_04605290 NA coding downstream 171263 4590284 ~ 4605694 (+)
CI01000029_04981453_04995255 NA coding downstream 562124 4981145 ~ 4995662 (+)
CI01000029_05041887_05044363 NA coding downstream 621976 5040997 ~ 5045063 (+)
G153672 NA non-coding upstream 47756 4330530 ~ 4362038 (+)
G153663 NA non-coding upstream 114816 4294761 ~ 4294978 (+)
G153660 NA non-coding upstream 123426 4286112 ~ 4286368 (+)
G153659 NA non-coding upstream 124023 4285544 ~ 4285771 (+)
G153658 NA non-coding upstream 124338 4285226 ~ 4285456 (+)
G153703 NA non-coding downstream 8687 4427708 ~ 4428185 (+)
G153707 NA non-coding downstream 129327 4548348 ~ 4914909 (+)
G153775 NA non-coding downstream 274714 4693735 ~ 4709748 (+)
G154352 NA non-coding downstream 512958 4931979 ~ 4932238 (+)
G153475 NA other upstream 847790 3545125 ~ 3562004 (+)
G152451 NA other upstream 1646855 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2881895 1526754 ~ 1527899 (+)
G151495 NA other upstream 4037872 366541 ~ 371922 (+)
G151415 NA other upstream 4184549 170521 ~ 225245 (+)
G153790 NA other downstream 314568 4733589 ~ 4740107 (+)
G154587 NA other downstream 851999 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1038220 5461497 ~ 5470346 (+)
G155079 NA other downstream 1863664 6282685 ~ 6288398 (+)
G155083 NA other downstream 2012514 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017603 opn8b coding NC_007131.7 CM002904.2 44311448 ~ 44347622 (+)