XLOC_017603 (opn8b)


Basic Information

Item Value
gene id XLOC_017603
gene name opn8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44311448 ~ 44347622 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034933
GGGAATCGAGAGCGCCAGACGCGCACCAGTAACCGCTCATGGCGTGTTCTTCTGTTTCACTCGTTATCGAGAAAATACAACGGCATCGATTCTGTTGGTGAGGGCTTCGCTTAATCTCCCCTGGACATCAGATGCTTCTGACACATGACAGCAGCGTAGATCATCTGAAGGGTTTTGCCTTGTGCCATTACGCGCATGTTTTCTGTAGCCTAACTTTTTCAGAGTCCCACCGATCCATGTCGAGCGCGTTTATTACTTGGAGTTAACTCATTTTCCCGCCGAAGAGCACATCGCACTGATCCTGATGGATATTTATTCATCTAAATTATCATCCGCTGTGGATTACGGCATCGGTGCGTTCCTGCTGCTCATTGCCATTCTTTCCATTCTGGGCAATCTGATGGTTCTTGTAATGGCATACAAGCGGTCGAACCATATGAAGCCTCCTGAGCTGCTCAGTGTCAATCTGGCGGTGACGGATCTGGGCGCCGCCGTCACCATGTACCCGCTGGCCGTAGCCTCCGCCTGGAACCACCACTGGATAGGAGGAGACGTCAGCTGCGTTTACTATGGTCTGATGGGATTTCTCTTTGGAGCAGCTAGCATGATGACCCTGACTATCATGGCTATTGTTCGCTTCATCGTGTCTTTGACCTTACAGTCGCCAAAGGAGAAAATCAGCAAAAGGAACGCAAAGATTTTAGTGGCAACCACATGGCTGTACGCTCTGCTCTGGGCTATTTTCCCACTGATCGGCTGGGGGAAATACGGCCCGGAGCCCTTCGGCCTGTCCTGCACTCTGGACTGGAGAGACATGAAAGAGCACAGCCAGTCTTTCGTCATCACAATCTTCCTCATGAACCTCATCCTGCCTGCCATCATCATAGTGTCCTGCTACTGCGGCATCGCTCTGAGACTCTACGTCACTTATAAAAGCATGGACGACAGCAACCACGTCCCCAACATGATCAAGATGCAGCGGCGGCTCATGGTGATCGCCGTGTTGATCAGCATTGGGTTTGTTGGATGCTGGGCACCATACGGCATCGTCAGCCTGTGGTCCATCTACCGGCCCGGGGATTCAATCCCTGCTGAGGTCAGCATGCTACCTTGTCTGTTCGCCAAGACGTCTACGGTGTACAACCCATTCATCTATTACATCTTCAGCAAGACCTTTAAACGAGAAGTCAACCAGTTGAGCCGCTTCTGTGGAAGATCCAACATCTGCCGTCCAACCGATGCCAAAAACAGGCCAGAAAATACCATTTACCTTGTGTGCGATGTGAACAAGTCCAAACCTGGAGTGGAGGATCTGTCGTTAGCAAGGAGTAAAGAGAATGAGACTCAAATGTTGCCAAATCAAGACTTGCATGAGTGAATCTGTACAGAACAATATTTGGCAGGAGCTCTAGTTATTTTTTTACCTGGTTTAAGGTACTAGGAGTGATCCGTGGACTCTTGAATGAACTCGTACATAAGCTGCAATATCGATCCATATCATCACATTATATGGCATAAAGCATTGCTGTGTTCACTGTATTTAGTAAGGAGTTCAGTTCTTATGTGACAGCTTTAGAAAACGGGCATTTCGCTGAGCCATCATATCACATTTAATATGTTTCAGCATGCTAAGTACAGTcaaatacatttagaaatacTTCAAATGAACGTTTTTTTACTCacctgttccaaacctgtatgactttctgCTGTGGAAGACAAAAGGAGGCGTTATCCATTGGTTTAAGCTTATGTTTTAAACTGTACAAAGTGCATTCTGTTTGATACTGCACTTTAAATGTGCCACCATATGTAAAACTGAATATATGCAGGCATAGCTG
>TCONS_00036676
CCATTCTTTCCATTCTGGGCAATCTGATGGTTCTTGTAATGGCATACAAGCGGTCGAACCATATGAAGCCTCCTGAGCTGCTCAGTGTCAATCTGGCGGTGACGGATCTGGGCGCCGCCGTCACCATGTACCCGCTGGCCGTAGCCTCCGCCTGGAACCACCACTGGATAGGAGGAGACGTCAGCTGCGTTTACTATGGTCTGATGGGATTTCTCTTTGGAGCAGCTAGCATGATGACCCTGACTATCATGGCTATTGTTCGCTTCATCGTGTCTTTGACCTTACAGTCGCCAAAGGAGAAAATCAGCAAAAGGAACGCAAAGATTTTAGTGGCAACCACATGGCTGTACGCTCTGCTCTGGGCTATTTTCCCACTGATCGGCTGGGGGAAATACGGCCCGGAGCCCTTCGGCCTGTCCTGCACTCTGGACTGGAGAGACATGAAAGAGCACAGCCAGTCTTTCGTCATCACAATCTTCCTCATGAACCTCATCCTGCCTGCCATCATCATAGTGTCCTGCTACTGCGGCATCGCTCTGAGACTCTACGTCACTTATAAAAGCATGGACGACAGCAACCACGTCCCCAACATGATCAAGATGCAGCGGCGGCTCATGGTGATCGCCGTGTTGATCAGCATTGGGTTTGTTGGATGCTGGGCACCATACGGCATCGTCAGCCTGTGGTCCATCTACCGGCCCGGGGATTCAATCCCTGCTGAGGTCAGCATGCTACCTTGTCTGTTCGCCAAGACGTCTACGGTGTACAACCCATTCATCTATTACATCTTCAGCAAGACCTTTAAACGAGAAGTCAACCAGTTGAGCCGCTTCTGTGGAAGATCCAACATCTGCCGTCCAACCGATGCCAAAAACAGGCCAGAAAATACCATTTACCTTGTGTGCGATGTGAACAAGTCCAAACCTGGAGTGGAGGATCTGTCGTTAGCAAGGAGTAAAGAGAATGAGACTCAAATGTTGCCAAATCAAGACTTGCATGAGTGA

Function

symbol description
opn8b Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; liver; and testis.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-120 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; liver; and testis.

Ensembl:

ensembl_id ENSDARG00000079045

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034933 False 1841 mRNA 0.47 4 44311448 44347622
TCONS_00036676 True 1004 lncRNA 0.51 3 44336006 44347159

Neighbor

gene id symbol gene type direction distance location
XLOC_017602 opn8a coding upstream 23960 44250691 ~ 44287488 (+)
XLOC_017601 LO018405.1 coding upstream 112633 44198698 ~ 44198815 (+)
XLOC_017600 LO018405.2 coding upstream 171587 44139745 ~ 44139861 (+)
XLOC_017599 BX510352.1 coding upstream 202229 44082532 ~ 44109219 (+)
XLOC_017598 NA coding upstream 315535 43974533 ~ 43995913 (+)
XLOC_017604 wdcp coding downstream 150434 44498056 ~ 44508391 (+)
XLOC_017605 CR545466.1 coding downstream 168541 44516163 ~ 44537787 (+)
XLOC_017606 NA coding downstream 216310 44563932 ~ 44567256 (+)
XLOC_017607 atad2b coding downstream 234696 44582318 ~ 44792557 (+)
XLOC_017608 CABZ01035143.1 coding downstream 587417 44935039 ~ 44935155 (+)
XLOC_017593 NA non-coding upstream 721667 43588656 ~ 43589781 (+)
XLOC_017592 NA non-coding upstream 755932 43548991 ~ 43555516 (+)
XLOC_017609 NA non-coding downstream 1076769 45424391 ~ 45425819 (+)
XLOC_017611 NA non-coding downstream 1318536 45666158 ~ 45669350 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_04409794_04419021 OPN8B coding CI01000029 null 4409794 ~ 4419021 (+)