CI01000029_05390624_05394576 (RAD51.S, RAD51.L, RAD51)


Basic Information

Item Value
gene id CI01000029_05390624_05394576
gene name RAD51.S, RAD51.L, RAD51
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5390624 ~ 5394896 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05390624_05394576.mRNA
ATGGCTATGAGGAACGCATCCCGGGTGGAGGTGGAGGCTGAGATCGAGGAGGAGGAAAATTTTGGGCCTCAACCTGTTTCCCGTCTGGAGCAGTGTGGCATTAGCAGCAGTGACATTAAGAAGCTGGAAGATGGTGGTTTTCACACCGTGGAGGCCGTTGCGTACGCCCCCAAGAAAGAGCTGCTGAACATCAAAGGAATCAGCGAAGCCAAAGCCGACAAGATCCTGACAGAGGCTGCTAAGATGGTTCCCATGGGCTTCACCACAGCGACTGAGTTCCACCAGCGCAGAGCTGAAATCATCCAGATCTCCACAGGATCCAAAGAGCTTGATAAACTCCTGCAGGGAGGAATCGAAACGGGATCCATCACTGAGATGTTCGGCGAGTTCCGCACTGGAAAGACGCAGCTGTGTCACACACTGGCCGTCACCTGCCAGCTGCCCATAGATCAGGGCGGTGGGGAAGGAAAAGCCATGTACATCGACACAGAAGGAACCTTCCGTCCAGAGAGACTGCTGGCTGTAGCTGAGAGGTACGGGCTGGTGGGCAGTGACGTACTGGATAATGTGGCGTACGCCAGGGCCTTCAACACAGACCATCAGACGCAGCTGCTGTATCAGGCCTCCGCTATGATGACTGAGTCCAGATACGCTCTGCTCATCGTAGACAGCGCTACTGCACTTTACAGGACAGATTACTCTGGACGAGGAGAGCTGTCCGCCCGTCAGGGGCATCTGGGCCGATTTCTGCGCATGCTGCTCCGTCTCGCTGATGAGTTTGGCGTGGCTGTCGTCATCACTAACCAGGTGGTAGCACAGGTGGACGGAGCGGCCATGTTTTCTGCAGATCCCAAGAAGCCGATTGGAGGAAACATTCTGGCACACGCATCGACTACTCGATTATATCTGCGGAAGGGTCGAGGTGAGACGCGGATATGTAAGATCTACGACTCCCCATGTTTGCCTGAGGCGGAGGCCATGTTTGCCATTAATGCTGATGGAGTGGGTGATGCCAAAGACTGAAATGATGCTGATCAGAGAACCTTCCTGCACTACTGTGAGCGATAGGAGGCCATCAGGAGGAGGAAAGACTCCTTTAAAATGGTTGAAATGTTTTTGTCTAGAATTATACTTTGAAAAAAGAGTGAACCCTTAAGAGTGAAATTCATGGTTTATTTACATATGCAAATTGACAGATCTGAGTGAGCTGGTGTAATTATTTGCTCTTTAATGTGATGTCAGCATCTTTGTTATTTACATGTTTTGTTATATTTGTGTTTTGTCTGGACTGAACCTTTTTCTTGTACATAAACTACTCATAAAGCATTTTATCTGTTAAACTA

Function

symbol description
rad51 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Acts upstream of or within several processes, including double-strand break repair via homologous recombination; hematopoietic stem cell proliferation; and response to methylmercury. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in brain; gill; liver; musculature system; and testis. Used to study Fanconi anemia. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group R; breast cancer; congenital mirror movement disorder; and ovarian cancer. Orthologous to human RAD51 (RAD51 recombinase).

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K04482 RAD51; DNA repair protein RAD51

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05390624_05394576.mRNA True 1343 mRNA 0.50 9 5390624 5394896

Neighbor

gene id symbol gene type direction distance location
CI01000029_05380959_05388911 NA coding upstream 1444 5380959 ~ 5389180 (+)
CI01000029_05341656_05353379 FLVCR2B, FLVCR2 coding upstream 37245 5340829 ~ 5353379 (+)
CI01000029_05338779_05339759 TAAR14B, TAAR14F, TAAR14G, TAAR14D, TAAR14E, TAAR14J, TAAR14H, TAAR14I, TAAR14L coding upstream 50713 5338570 ~ 5339911 (+)
CI01000029_05313679_05325092 TAAR14L, TAAR14E coding upstream 65441 5313474 ~ 5325183 (+)
CI01000029_05310130_05311110 TAAR14J, TAAR14H, TAAR14I, TAAR14L, TAAR14E coding upstream 79340 5309966 ~ 5311284 (+)
CI01000029_05402102_05409884 ZC3H14 coding downstream 7206 5402102 ~ 5409997 (+)
CI01000029_05433797_05436469 NA coding downstream 38749 5433645 ~ 5436494 (+)
CI01000029_05444811_05447063 NA coding downstream 48462 5443358 ~ 5447664 (+)
CI01000029_05461497_05468985 BATF coding downstream 66601 5461497 ~ 5470346 (+)
CI01000029_05474130_05494930 ADCY3 coding downstream 78867 5473763 ~ 5495219 (+)
G154560 NA non-coding upstream 32021 5358155 ~ 5358603 (+)
G154586 NA non-coding upstream 120244 5270132 ~ 5270380 (+)
G154398 NA non-coding upstream 329209 5061054 ~ 5061415 (+)
G154340 NA non-coding upstream 341237 5048986 ~ 5049387 (+)
G154335 NA non-coding upstream 365442 5024881 ~ 5025182 (+)
G154511 NA non-coding downstream 25216 5420112 ~ 5424220 (+)
G154620 NA non-coding downstream 32766 5427662 ~ 5427872 (+)
G154536 NA non-coding downstream 53160 5448056 ~ 5451291 (+)
G154564 NA non-coding downstream 58414 5453310 ~ 5454135 (+)
G154572 NA non-coding downstream 176206 5571102 ~ 5571475 (+)
G154587 NA other upstream 119089 5271020 ~ 5271535 (+)
G153790 NA other upstream 650517 4733589 ~ 4740107 (+)
G153475 NA other upstream 1828620 3545125 ~ 3562004 (+)
G152451 NA other upstream 2627685 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 3862725 1526754 ~ 1527899 (+)
G155079 NA other downstream 887789 6282685 ~ 6288398 (+)
G155083 NA other downstream 1036639 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1511292 6905834 ~ 6908633 (+)
G155522 NA other downstream 2239937 7634833 ~ 7637834 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location