CI01000029_05402102_05409884 (ZC3H14)


Basic Information

Item Value
gene id CI01000029_05402102_05409884
gene name ZC3H14
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5402102 ~ 5409997 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05402102_05409884.mRNA
GCGGCGATCAAAGGAAAGTTGCAGGAGCTTGGCGCTTATGTGGACGAGGAGCTTCCGGATTACATCATGGTCATGGTGGCCAATAAGAAGAACCCGCAGCAGATGGCGGATGACCTGTCCTTGTTTCTAGGCAACAATACCATCAAGTTCACCGTATGGTTACATGGTGTTCTGGAAAAGCTGAGATCAGTTGCAGTTGAGCCCACATCTGTCCGTCCTCCTGTTGTGCACTCAGAGACGAGCATCCCAGCAGAAAGCAAAAGGAGGGGGGCGGAGCCTCGCGCTCTCGCTGTTTCCAGCTCGCGCTCTGATAAGGTGGAGGGGCGTGTCTCGAGCTCCGCCCATGAGAACCGCGCCAGGAGAGGCTCTTCTGAAAGACCCTCCCGACTCACATCCGCTGTCAAACCACTGATGGAGGCATCGGCTGAAGCTGTGATTGACATCAAGCCCGACCTGGACAATGACCTCATTGGCTATGACCCTCTGGAGCAGAGCTTGACCTCGGTTCACACGCAGGCTTTATACAGCCGTTCGACAGCAGAGAGGCCTCGGCCAGCTGTGGAGTCTTCAAGACGGACGGCGGACGCTTACAGGTCCACAGACGTCACAAGAGGTCAGGAAAGGTCAGGATCCAGCCATGAGCGGGGCTACAGGAGCTCAGCAGAGAGCAGCAGGGATTTGTACCGGAAACGAAAAGCGCCCATGGCCAGTTCAGTGGTTCGGGTTCACAGAGGTCATGAACGCGGGCAGGAGGCTGATGAACTGGATGAGGAGGAGGATGAAGACGAGGAAGACTATGGTATGGCTAGCAAAGTGTCTCTGCCATCAAAACCTGAGCGCAAGCCTTCTCTCCCACCAGCCAAACAAGCCAACAAAAATCTGATCCTCAAAGCAATCTCAGAAGCTCAGGAATCCATCAACAAGACTACTACATACACAGTTCCCCAGCGGCAGACGGTCCCTGTAGCGCCACGGACACGTTCAGCCAGTGACGAGATGAGTAACGCTGCAATTCGGTTGGTCCAGGAGCACCTGCATGCTCTCACGCCCCAGGAGACACTGCACAATACCCAATCCAGAGCTTTAGCATCTCGTCTGCAGTTGGAGCTTCCAGAGGAGGACAGCCAAGAGCAGCTCAGTGAATACGAGCTGCAGGTTTTAGAGGCGGCGAGACTCAAGGCTCTGGACACACGTTCGTTCATCATGAGGAAACCAGAGCTGGAACAGACTCCACCAGTCAGGAGCAGGCTTACTACTGTCAATCAGAATGAAGACCCGCCCACCACATCCAGAATGGTGCAGGCCAGAGAGAAAGCGGAGGGCGCGGGCGGCTCGAGTCCAAAGTTTATCGTGACATTGGATGGAGTTCCCAGTCCATTAGCCAGCCGCACAGATCAGGAGATGGAGCCTGAGGACGAGTTCAACACGACCTCTAATCTTCCGGAAAATGACAAACCCAAACCTTCCATCCACCTCAGACTCGGCACTGAATTTATAAACGCTGGTGATAGAGAGATGGATGAGCTGGAGGACATGGACACAGAGCCGGTTCAGGCTAAGCGGCAGAAACTTCCAGAGCGCTGCAAGTTCTGGCCTGCGTGCAAGAGCGGAGACGAGTGTTTGTACCATCACCCCAACACACAGTGCAAAATGTTTCCCAACTGTAAATTTGCAGACAAATGTCTGTTTATTCATCCAAACTGTAAGTTCGATGCAAAGTGCACCAAAGCAGACTGTCCATTCACACACGTCAGCAGAAGAGTCAACGGCAACCCTACAAGAGCAGCTCCAGCTCCAACCAGCAGCGTGTGCCGTTTCTTCCCAGAGTGTAAAAAGCCAGACTGTCCGTTCTACCACCCTAAATTGAGAAACAATCAAGTGAGTGATCAAGCTGCAGTGTTTCTACAGTTCATGCAGAGCTTCCTCGGTCTCTTCTGACATCAATCTGAACATTTGTTTTGTGCTTTTATGTTTTTTGATTAATTTTTAAAACAAATGAATTTTATAAAATGCTACTTTCTGTAAACTGTTTGCAGAATATCTTTTGTGTA

Function

symbol description
zc3h14 Predicted to enable poly(A) binding activity. Predicted to be involved in negative regulation of mRNA polyadenylation and regulation of mRNA stability. Predicted to be located in nuclear speck. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ZC3H14 (zinc finger CCCH-type containing 14).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05402102_05409884.mRNA True 2051 mRNA 0.52 15 5402102 5409997

Neighbor

gene id symbol gene type direction distance location
CI01000029_05390624_05394576 RAD51.S, RAD51.L, RAD51 coding upstream 7206 5390624 ~ 5394896 (+)
CI01000029_05380959_05388911 NA coding upstream 12922 5380959 ~ 5389180 (+)
CI01000029_05341656_05353379 FLVCR2B, FLVCR2 coding upstream 48723 5340829 ~ 5353379 (+)
CI01000029_05338779_05339759 TAAR14B, TAAR14F, TAAR14G, TAAR14D, TAAR14E, TAAR14J, TAAR14H, TAAR14I, TAAR14L coding upstream 62191 5338570 ~ 5339911 (+)
CI01000029_05313679_05325092 TAAR14L, TAAR14E coding upstream 76919 5313474 ~ 5325183 (+)
CI01000029_05433797_05436469 NA coding downstream 23648 5433645 ~ 5436494 (+)
CI01000029_05444811_05447063 NA coding downstream 33361 5443358 ~ 5447664 (+)
CI01000029_05461497_05468985 BATF coding downstream 51500 5461497 ~ 5470346 (+)
CI01000029_05474130_05494930 ADCY3 coding downstream 63766 5473763 ~ 5495219 (+)
CI01000029_05496375_05508658 WDR26, WDR26B, WDR26.S coding downstream 86378 5496375 ~ 5508746 (+)
G154560 NA non-coding upstream 43499 5358155 ~ 5358603 (+)
G154586 NA non-coding upstream 131722 5270132 ~ 5270380 (+)
G154398 NA non-coding upstream 340687 5061054 ~ 5061415 (+)
G154340 NA non-coding upstream 352715 5048986 ~ 5049387 (+)
G154335 NA non-coding upstream 376920 5024881 ~ 5025182 (+)
G154511 NA non-coding downstream 10115 5420112 ~ 5424220 (+)
G154620 NA non-coding downstream 17665 5427662 ~ 5427872 (+)
G154536 NA non-coding downstream 38059 5448056 ~ 5451291 (+)
G154564 NA non-coding downstream 43313 5453310 ~ 5454135 (+)
G154572 NA non-coding downstream 161105 5571102 ~ 5571475 (+)
G154587 NA other upstream 130567 5271020 ~ 5271535 (+)
G153790 NA other upstream 661995 4733589 ~ 4740107 (+)
G153475 NA other upstream 1840098 3545125 ~ 3562004 (+)
G152451 NA other upstream 2639163 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 3874203 1526754 ~ 1527899 (+)
G155079 NA other downstream 872688 6282685 ~ 6288398 (+)
G155083 NA other downstream 1021538 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1496191 6905834 ~ 6908633 (+)
G155522 NA other downstream 2224836 7634833 ~ 7637834 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location