CI01000029_05578983_05588654


Basic Information

Item Value
gene id CI01000029_05578983_05588654
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5578632 ~ 5589707 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05578983_05588654.mRNA
AGATAAAAACATCCTGTTTTTCTGCCCAGTCTTATTTTCATCTTTTCATCTGATTTGTTCATATCTAATACTTCAGATTATTACACTGCACTTTACATTTACACAATAATATAATGTGACCTCATTTCAGAGCCAGAACAGTACAGTACACACTTGTTTGATCAGATCTCAGATTAACTCTCTTTTTCTGATGATTCCCTACAGGAAGTGATTCCATCTTACCTGGCCACATCTCCCATTCCGTCCGACGGGGGTTTTCTGATGGGCTCCTGCACTGAGAATGGAATGATGAAGAAGAGGAGGAAGAGGAGAAGGAAGTGCAGATTGGAGGATGTGAAGAGGGAGGAGAGCATGGAGTTCTCAGAGGAGGAACTGTTCAACATCGACATCAATGACAGCGAGCAGCACGATCAGAACAGAGACCTGCCGAATGTAGGTTCATCCACTGGAAACAAGCAAAACACAATTTATGCTTGCTCAGATGGAGAGTGGAGTCCTGTTCACAGTCCTAATGTGTCTCGTCCCTGCACTCCTAAGAGTGACTCTGAACTACTTTGTAAAGATCAGCAGGAGGATTCGGCCATGTTGTGGTCCTGGGGGGAGTTACCACAAGCTGCCAAGCCATCGTTTCTGTCAGCGAAACCAAACGTCCTGCCTGCGTGCCCACTGTCAATCCCAGTCTCTGACAACACACATTTCAGAGTCATCCCTGAGACTGCCACCCATAACCATCACAGCAACAGGACATTACATGCTAATGGCCAATCAAACAGAGTGAAAGAGTTTGAAAAGCAGGATGTGACACCAGCAGCTTGTGTGATGTCTGAGGTTGAGGAGGGAGGAACAAAAACAGGACCCCTCCTACAGAATAAGACTAAAAGAAAAGATAAGAAAAGTCGCCATCTGGGTTCTGATGGAGTGTATTTGGATGATATAAAAGATTTGGAGCCGGAGGTGGCGGCACTTTACTTCCCTAAAAGTGGTTCAGAGCGTTTCGGTGAGAACGGTGTCCGCAGTGTGACTGTGTCTCCTCAGTCTATGTGCAGCTCAGGAGCAGACAGCGGAGTGGACAGTTACGACCTGCCCACTATGGCCATCTCTCTCTGTGGAGGACTCACAGAAAACAGAGAGATCACTAAAGAGCATTTCCAGCAGAAGTCTGTGTCTTTTCAGCAGTTTGCTGATAATCCGTCTATCATTGATGACCCTAATCTGGTGGTGAAGATCGGCTCTAAGTATTATAACTGGAGCACTGCTGCTCCTATTATGCTGGCTACGCAAGCCTTCCAGAAACCATTGCCTAAGGCCACCGTAGAGAGACTTATGAAGGAGAAGATGCCCAGAAACCGAGGAAGATGGTGGTTTTCATGGCGAGGAAGAACAAACAGCACCAAACCGGATTCAGTCTCATGCGGTTCAGCCTGTGCTGCAGGAGACGAGACCATCAAGAACAGACGGACAGAAGAGTCTTCCTCCAGCGATGAAGATCACTTATCTGCCAAGCAAACCCCCGTACCTGTTCACACAGACCCCGCCCCTGCTGGAGGGGGCGTGTCCTATCAGAAAACTCTCCGCCTTTCTTCGGAACAACTAGTCAGTCTCCAGCTAAAGGACGGTCCTAATGATGTATTGTTTAGCGTGACGACTCAGTATCAGGGCACATGCCGCTGTGAGGGAACCATCTACCTGTGGAACTGGGATGATAAAATCATCATCTCAGACATTGATGGCACAATCACCAGGTCAGATAAGTTGGGGCACATTTTGCCCACACTGGGTAAAGACTGGACCCATCAGGGCATCGCACGTCTGTATCATAACGTCAGCCAGAACGGTTATAAGTTTCTGTATTGCTCAGCGAGGGCGATCGGTATGGCTGACATGACACGGGGTTACCTGCACTGGGTCAACGAGAGAGGAACCATGTTACCACAGGGACCCGTTTTACTGAGTCCCAGCAGCCTGTTTTCAGCACTGCACAGGGAGGTGATTGAGAAGAGGCCGGAGAAGTTTAAGATAGCGTGTTTGACAGATATTAAGAATCTGTTCCTCCCAAACACAGAGCCCTTCTACGCAGCATTCGGGAACAGAAACACCGATGTGTTTTCCTATAAGGAGGTGGGTGTTCCCTTAAACCGAATCTTCACTGTCAATCCTAAAGGAGAACTGATCCAGGAACATGCCAAGACCAACATCTCATCGTACGTGCGCCTGGGTGAGGTAGTGGATCACGTTTTCCCGCTCCTGAAGCGCAGCAGTTCATGTGATTTCCCCTGCAGTGACACCTTCAGCCAGTTCACCTTCTGGAGAGAACAGCTCCCCCTTGTGGACGGACAGATAGCAAGCACTATCAACACCTCTCGCTGAACAGCTGCACGGATCTACACACAACATCACTTGTGGACGCTCACATAAACTGCACAGAGTACAGAAATACAAAACGGGCACAGTCTAAAAACCAAAACTGAACATACTGAAATCAGTGCAAACATGAAAATCACACAAAATTCATGTGTGGGTCTGGACCTCAGAAAAAAACTGCACTTTCTTTCAAAAAAGTCTTCACATGTCATTTGTGATTTATTGTATATTGTTAAATTAAATATATATATATATATATATATATTTTTACCGTTTCAGTTTTGCTTGTGATCACAAGCTTTGTGTTGAAAAGCATCTGTTAATATATGAATGAAACTGAATAATGTTACATTTCACACAATTTGAAATGCCCAGGTCATATTTCACCCCAAAATCATTATTTTGCAAAAATAACGTAAAAATTATATATATAGTTAATAGTCCAAAAACACAGTTGATTTTCTTTATGCAAAATATGACTTGGACATTTCTTGGCAGTTTTTGTGAGACTTACTCCTATTATTTTAAGAGAAATTAAAAACAATGGAGGGTATATAGAAAATGTTACATTTCTTTATTTTTGAATGGACATCATTGAACTGTTACTTGGTACCTTGTTGTTGATGTATTATGTAATATTTTATCTGTCTGATTATTTAATAGGTCATCTGTGGTCATATCACAGCTGTATTCTGATATTCCTGCCTTCATGTTTTTAACCAGCACTTTATGTGTTACTGAAGAAAAATATGCGGTCATAATTTCCTATGAATTACTAATCATAACTCTGACTGGGTTTCTTCCATTTTATTATGGTTTCATTGGGGTTTAAAGATTTAGATATGTAGTATATGAGACAGACTCACTTTAAAAATATTCTATATCTGTAGCTTGATGCTGTTGATATAACTTTTTTTTGCCTTTTAATTGAAAATTATTTTCAGTTATTAGTTCCAAAGAGAGAGTGTTTGGTGTTTTGTCTGATTTTCTTTCAGTGAAAGAGCAGTAGATTCACAGGTGATTCTTCTTTGAAGGAAAATCCATCTGTTTTGATCTTCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05578983_05588654.mRNA True 3420 mRNA 0.43 17 5578632 5589707

Neighbor

gene id symbol gene type direction distance location
CI01000029_05577218_05577697 NA coding upstream 95 5577218 ~ 5578537 (+)
CI01000029_05521742_05525648 FEZ2 coding upstream 52700 5521742 ~ 5525932 (+)
CI01000029_05512755_05521332 FEZ2 coding upstream 57300 5512755 ~ 5521332 (+)
CI01000029_05496375_05508658 WDR26, WDR26B, WDR26.S coding upstream 69886 5496375 ~ 5508746 (+)
CI01000029_05474130_05494930 ADCY3 coding upstream 83413 5473763 ~ 5495219 (+)
CI01000029_05591971_05597708 NA coding downstream 2264 5591971 ~ 5597842 (+)
CI01000029_05695252_05699826 NA coding downstream 103458 5693165 ~ 5699878 (+)
CI01000029_05772821_05785145 NA coding downstream 183114 5772821 ~ 5785381 (+)
CI01000029_06015438_06024591 HADHA, HADHAA coding downstream 425731 6015438 ~ 6025083 (+)
CI01000029_06066859_06073942 NA coding downstream 477152 6066859 ~ 6073974 (+)
G154572 NA non-coding upstream 7157 5571102 ~ 5571475 (+)
G154564 NA non-coding upstream 124497 5453310 ~ 5454135 (+)
G154536 NA non-coding upstream 127341 5448056 ~ 5451291 (+)
G154620 NA non-coding upstream 150760 5427662 ~ 5427872 (+)
G154511 NA non-coding upstream 154412 5420112 ~ 5424220 (+)
G154674 NA non-coding downstream 121402 5711109 ~ 5711373 (+)
G154675 NA non-coding downstream 130581 5720288 ~ 5721868 (+)
G154900 NA non-coding downstream 268002 5857709 ~ 5858056 (+)
G154905 NA non-coding downstream 270111 5859818 ~ 5861073 (+)
CI01000029_05461497_05468985 BATF other upstream 108286 5461497 ~ 5470346 (+)
G154587 NA other upstream 307097 5271020 ~ 5271535 (+)
G153790 NA other upstream 838525 4733589 ~ 4740107 (+)
G153475 NA other upstream 2016628 3545125 ~ 3562004 (+)
G152451 NA other upstream 2815693 2761594 ~ 2762939 (+)
G155079 NA other downstream 692978 6282685 ~ 6288398 (+)
G155083 NA other downstream 841828 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1316481 6905834 ~ 6908633 (+)
G155522 NA other downstream 2045126 7634833 ~ 7637834 (+)
G155627 NA other downstream 2341773 7931480 ~ 7932177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location