CI01000029_05591971_05597708


Basic Information

Item Value
gene id CI01000029_05591971_05597708
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5591971 ~ 5597842 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_05591971_05597708.mRNA
AGTGCTGAAGCACTGAGTGCAGAACCTGATGGCTTCTTTGACATGCTGGAGGAGAGGAGGCGGAGCAGTGACTTAAGCCACGCCTTTCGGACCTTTAAACCTCAGCCATACCGTGGAGCCACACCCATTTCAGCTGCTGCTCTCAACAGGATGGTGCTTGAATCACAGTACCTGAGCTACATCATACAGGAGATCATGGTTGAGTGCGATGAACCACGTGAGGCAGTTCTAGAGGAAGCGTCTGCGTTACTGGACGAGATGAGTCAAAACCTTCAGCTGGGCTTCATTCGTCTGCTGGGCTTCGCATTTAGCAAAGTTTTTAAAAGCGTGTTCAGCGCTATACATGTCAACGAGGATGGACTCACACGGCTCCAGCAAGCCATTCAGGAGCATCCCGTCATCCTGATGCCCAATCACAGGAGCTACATGGACTTCCTTGTTCTGTCTTACATCATGTTCACTTATGACCTCTCTATCCCCGTCATTGCAGCTGGAATTCGCAAGTATCTACAGGTTTTTGTTGTAATTGTAGGTGGCAAAACCACACAGTCGCATCATGTACTTTTTAATTTTAAAGCTCTGATGGGGATGAAGCTGATTGGTGAGATCTTACGACGGTCAGGCGCGTTCTTTATCCGTCGTGCCATTGGCTCGGACAAGCTGTACTGGGCGGTGCTGTCTGAGTACGTCAGAACGATTGTGCGGACAGGTTATGCTCCATTAGAGTTTTATGTCGAAGGATTACGGAGTAGAACGCTGAAATCTCTCACACCAAAACTAGGAATGATGCACATGGTGTTGGAGCCCTTTTTTAAAGGAGAGGTGTTTGACATCAGTCTGGTCCCCATTAGCATCAGTTACGAGCGTGTGTTGGAGGAGTCGCTTCTCGCTCATGAGCTGCTGGGTGTGCCTAAACCTAGAGAGACTACAGGGGGTTTGCTGAAGGCCAGGACGGTGCTGAAGGAGGATTACGGCTGCATGCATGTGTGCTTTGGAAACCCTGTGTCTGTGAGAGACCTGGTCAAGGGAAAGATAAACCGCAGGCAGTACAATCTGGTACCCAGAGATCTGCCCATGAAGCCCAATAAGGAGACACAGGAGTTTGTATCTGGTCTAGCCCACATGATCATCCGTTTGCAGGAGAGAAATGCAGTACTGAGCGCCTGGAACCTGATGGCCGTGGTTCTCCTCCAGAACCTCCAGGGCATTGATTTGGACCTGCTGACCCACAAAACCCTCTGGCTGAGGAGAATCGCCCTGCAGTTTGGAGCCCACATCAGATGGCCCAAGCATGTTTCGGATTCTGAAGTGATGTCATCAAGCATAACCCTGCATCACTCAGTAGTGCGCTGTGAGAGGGGGCGTGTCTATTTAGTGGAGGAGGAGGGTCCAGGACCTGTCACTCAAGAGGAGGGCGTGTTCCAACGTGCTGCTGCTGTGCTCATGTGCGCCTCCTACAGGAATCAAGCAGTACATGTATTCACACGGCCAGCTATGGTGGCAGTTGCAGTGACGACAGCTGTAAGCAGTAGGACAGACGACGTGTTTCATCATTTTAAGTTCCTTCTGGAGCTCTTTTCCAATGAGTTTGTCTTCATTCCTGGTCAAGCTGTTCAGGACTATGAGGAGGGCTGCTCTTTGCTGCAGCAGTCTGGTGTAATCGGCCGCTCTGATGAAGAGGTCTATGTGAGAGACGACGGCCAGGACACCATCGTCTTCCTCAGAGCGATTCTGCAGCCTTTTATTGAGAGTTACCAGGTGATTGTAGTCATCTACACAGTTGTCCAGGCAGTTCACCATGTCGATGGATCAGTAACAGAATGTGAAGTTCAGTCGTATGAGTGTTTATCATCTGACCTACAGAAGAACGTTCTCTCAGCTTTGCTCAGGATGGCTGCTGTGACCAAAACTAAAGTGTAAACTGATACAACACACATATACGTCCTCTGAGAAATGAACTTTGAAATTAAAATGCATTTACGAGCACAGAAATGAAGTTAATAACAATGTCATCTCTCTGTATCTCAGCGACGACCAGAATGAGTTCAGAGTGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008374 O-acyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_05591971_05597708.mRNA True 2054 mRNA 0.49 12 5591971 5597842

Neighbor

gene id symbol gene type direction distance location
CI01000029_05578983_05588654 NA coding upstream 2264 5578632 ~ 5589707 (+)
CI01000029_05577218_05577697 NA coding upstream 13434 5577218 ~ 5578537 (+)
CI01000029_05521742_05525648 FEZ2 coding upstream 66039 5521742 ~ 5525932 (+)
CI01000029_05512755_05521332 FEZ2 coding upstream 70639 5512755 ~ 5521332 (+)
CI01000029_05496375_05508658 WDR26, WDR26B, WDR26.S coding upstream 83225 5496375 ~ 5508746 (+)
CI01000029_05695252_05699826 NA coding downstream 95323 5693165 ~ 5699878 (+)
CI01000029_05772821_05785145 NA coding downstream 174979 5772821 ~ 5785381 (+)
CI01000029_06015438_06024591 HADHA, HADHAA coding downstream 417596 6015438 ~ 6025083 (+)
CI01000029_06066859_06073942 NA coding downstream 469017 6066859 ~ 6073974 (+)
CI01000029_06076254_06083211 XKR5 coding downstream 478279 6076121 ~ 6084211 (+)
G154572 NA non-coding upstream 20496 5571102 ~ 5571475 (+)
G154564 NA non-coding upstream 137836 5453310 ~ 5454135 (+)
G154536 NA non-coding upstream 140680 5448056 ~ 5451291 (+)
G154620 NA non-coding upstream 164099 5427662 ~ 5427872 (+)
G154511 NA non-coding upstream 167751 5420112 ~ 5424220 (+)
G154674 NA non-coding downstream 113267 5711109 ~ 5711373 (+)
G154675 NA non-coding downstream 122446 5720288 ~ 5721868 (+)
G154900 NA non-coding downstream 259867 5857709 ~ 5858056 (+)
G154905 NA non-coding downstream 261976 5859818 ~ 5861073 (+)
CI01000029_05461497_05468985 BATF other upstream 121625 5461497 ~ 5470346 (+)
G154587 NA other upstream 320436 5271020 ~ 5271535 (+)
G153790 NA other upstream 851864 4733589 ~ 4740107 (+)
G153475 NA other upstream 2029967 3545125 ~ 3562004 (+)
G152451 NA other upstream 2829032 2761594 ~ 2762939 (+)
G155079 NA other downstream 684843 6282685 ~ 6288398 (+)
G155083 NA other downstream 833693 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1308346 6905834 ~ 6908633 (+)
G155522 NA other downstream 2036991 7634833 ~ 7637834 (+)
G155627 NA other downstream 2333638 7931480 ~ 7932177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017656 GNPAT coding NC_007131.7 CM002904.2 46924390 ~ 46946574 (+)