CI01000029_07885342_07908699 (ARHGAP39)


Basic Information

Item Value
gene id CI01000029_07885342_07908699
gene name ARHGAP39
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7884282 ~ 7909792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07885342_07908699.mRNA
TTTTAAAAATGGCCTTTGAAGACTGAAATTTTGTGCTTAATCTAAAGTCAAACATCACTCATAGTTAGTGTTAGTAATTTGAACAAAACTGACATTCTCATTAAAATACTGAAACAACTTTCTTTCAGCTGATATCATCAATCCCTCTTATTAAATAGAGACACTTTGTATCATCCAGTCATTTGCTCATGGATAAAATCCCACTGATTTCATTTTTTTTTCTCACTGAATAACCTGTTTCACTTGGAAATTCATCACATTTAAGAAGTAAAATTTTTTGTGATCATTTCAGAACAAGATATTTTAACATATTAGTTTCAATAAACTGACTTTTTGGACAGGAAAGTGAGTTTTGAGATCTGGAGCTTAGGAGAATGTCTAAAGAGCAAAATACTTATTTTATTAAAAATAAATGTTCATATTTTTTATTTTATTATATTATTTTTTTAATTATTTTATTTTATTTTATTTTATTTTACATGGTATGACCCCTTAGATAAATAGTAAATATAAAATAAGTAAAATAAAATAAGAACATTTATTTTATTAAAATAATAAATATAAATAATAAAGAAATAGTAAAGAAAATATGATTTATTATAAAATAGTCTTATTTTTCTTTTCCCTTTAATAATAATAATAATAATAATAATAATAATAATAAATATTTATTAAAGGGAATATATCATGAAATAATAGTTATTGGTAAATAGATAAAATAATACAGATAAATATAAACAGATAATATAAATAGATTTTAGATACAGATAAATAGATAAAATAAAAGTATTTAAATATAAATTACTTGAAATAAAATAAATAATTTACTTTGCTTTTTTATTATATAACCCCTGTAATCAATAGATAATATAAATGGAATTTAGATATAGATAAATAGATTAAATAAAAGAATATTTATTTAATCAAAAATAAATTATTTAAAATAAATTAAATAATTTATTTTATTTTAATTTTCATGATATAACCCCTGTAAGCAATAGTAAAAAAGTCTTATTTTCTCTTGTTCAGATTTAGATGGGGCACTGGCACCAGAGAGAGGATGCTCATCAAGGTGTCGGATCGGGAACCCAGTTTTCTGACGCAGGGAAACGGATATTCCAGTTCTTCCCCACGTTCCAGACGCTCGTCCAGCAACGCTCCATCGGACCCTGAAGCCACACCCCTTTCCCTGTCTGACCGGCCCGCAACGCAATCCCCATTCCTGAAGAGGGCAGAGTTGGGCGGCACTCAGCGGCGCTGCTCGGGTGATTCCCAGCCATCGTCCCCTCGCTATGCGTACGAGCCTCCTTTGTATGAGGAACCGCCCTCGGAATACCAGTCCCCGCCTATTTATGAGGAACCGCCCACTGACATGCACTGCGACCCGGCCTTTTTTGGCTCCGACAGGTCTCCGGCGCGAAAACCAGGTCTTTACCATTCTCCCAAGCAAAGCCCATCTCCTTATGGTCAACTGGTGTTGACAAGACAGCGGAGCTCAACGCCCGAGAAGACGCCCAACCAAGGCGACTATAGCTCAAGTGGGCGGGACTATAGCTCTGCAGGGCGGGACTACAGCTCCAGTGGGCGGGATTATAGCTCGGGCGTGAGGGACTACAGCTCTGCCGGTCGGGATTACAACTCTAGTGGACGGGAGTATAGCGCCGCTGGGCGGGAATATGTAAAGCAGCTAGTTTATGTTGAGCAGTCTGGCTCCTCCCCTCGATTTAGGACGACAGAACGTCTGCTGAGCTACGGGACGACCAGTTCAAATAGCCTATCAGCCGGATTTTCTTATGGCGGCTCCTTTACGCTACAGCACAGTCACGACCTCAATGGTGGCAACCGAAAACGTAAGAACCGGAAGCCTTCTTTGCCGGGAGGAGAGGGGGAAGGCATGGGATCAGGTCTCGGGGCGATGATCACTCAAGCCCGGTTGGCATGGGAGGCTCAGCAGATGTTACATCAGCGAGGGGGTGTGTCCTCCGACCAGGGAGTGAAAGACGGGTATGAAAGTGACGGGGCGACGCCCCTGCCGCTGCCTGGCCCGGTGGTGCGGGCTTTCAGCGAAGACGAGGCGCTGGCGCAGCAGGACAGCCACTGGAAGCGCGCCACCCTGGACAGACTGGCATTTCCTCAGGCGCTTCTAGAAAAAAGTCTGTCCGTGCAAACCAACCTGGCATCACCAGAACCTTACCTCCATCCCTCGCAGTCGGAAGATCTCGGAGCCTGTTCTCAGTTCGAGGCCAGCCGGAACGCCCGGAACATGATGCCCAGTGCGAGCTGCGGCGTCTTCCCAGAGTTCACGCTCCGCAAACCGTCCTCGGAGACGGACATCGAGAACTGGGCATCCAAACACTTCAACAAGCACACCCAGGGTCTGTTCAGGAGGAAAGTCTCCATCGCCAACATGCTGGCCTGGAGCAGCGAGCCCATCAAGAAGCCCATGATCGTGACTTCCGACCGAACCGTCAAGCGTGAGGCCGTGGAGCTCTTCAAACTGATCCAGACCTTCATGGGCGACCGGCGGGGCAAAGGAGACCCTCTGTCGGTGGCTCTGGAGGTGGCCGTGAGGGGCTGGAGCTGTCAGGGCCTGAGGGACGAGCTTTACATCCAGCTGTGCAGACAAACCACGGAGAACTTCCGCTACGACAGCCTCCAAAGAGGCTGGGAGCTCATGGCCATCTGTCTGGCCTTCTTCCCCCCGACGCCTCGCTTCCACAACTACCTGGAGGGCTACATCTACAGACACATGGACCCGCTGAACGACACCAAGGGAGTGGCGATAAGCAGCTATGCTAAATACTGTTACCGTAAACTCCAGAAAGCTGCGCTCACCGGAGCCAAGAAGGGTTTGAACAAGCCCTCAATAGAGGAGATCGCTCACGCTCGCAACGCCATCTTTAGGCCCTCCATGTTCGGTTCGTCTCTGGAGGAAGTGATGGCGATGCAGAAGGACCGTTACCCTGATCGACAGCTGCCGTGGGTTCAGACGCGTCTCTCAGAGGAAGTGCTCGGCTTGAACGGAGACCAGACTGAGGGCATCTTCAGGGTGCCTGGAGACATTGATGAAGTAAACGCGCTGAAATTACAGGTGGACCAATGGAAGGTGCCGACCGGCTTGGAGGACCCACATATTCCAGTACAGTGGGATCCAAACGTACGCGACCACAGCGATAATCTTCAGTTTGGTTTGGAAGAATCTTTTGTGCACCATTTGTATATCTGTCTCTCATGTGTAGCGTCCCTGCTGAAGCTCTGGTACAGAGAGCTGGAGGAGCCGGTGATTCCTCACGAGTATTATGAGCAGTGTGTCATGAACTACGACAGTCCTGCAGCTGCTGTCAACGTCGTCCTCAACCTCCCTCACATCAACAAACTGGTGCTCTGCTACCTCATCCGATTCCTACAGGTGTTTGCTCAAGCCGCCAGTGTGTCCATGACTAAGATGGACGTCAGTAATCTGGCGATGGTTATGGCCCCCAACTGCCTGCGCTGCCAGTCCGACGACCCGCGCATCATCTTCGAGAACACGCGGAAAGAAATGAGCTTCATCCGCGTGTTGATCCAGCACCTCGATACGAGCTTCATGGACGGGGTGCTATAGCACAAACACTTCAAACACACACATTAACATTCACACCTAACAAGTTTTGCGGGTGAAAAGAACCGTTCGCCCACACATGAATCACCCAGCAAGCTCCCATCATTTACACGTACTCGCATAATACACGGTCACCTTTCCAAACCCACTGCAACGTTTAGATCAACACCATCCCCGATGATTTCTGAATGTTTCTGAATAGATAAACCATCCGTCCTCACATGATAGTGACTGTCCTGCTTTGGTTTCTAGCGTGCATGTATGTACTGAAAGTGTCCGTTTCTGTTTTTTAACTCGACTGACTTGTAGAACAGTCTGTCTGATTTTATATGATTAATTTATTTATTTATTTGAACAAGGGTTTGTAAGTATTGTACTGCCTTTTGAAATAGAAAACATCTGTCCTCACTGATGATCACATGCATTGATCTGTGTGTGTGTGAGAGAGAGAGAGCGAACGAGTGTGTGTGTATGAGTTCATTTATCACATTTGTTTTATACACTATTGTGTACGTCTCACTGAAATGGTGCAACACAAGTGCCCCTCATAGCGAACTACCTTCGGTAAAGGTGAAGTGACATGATTTATACACTTTCTGAAGAAACTGGTTGAATCAGAAAGTGTTTAACATCCAGAATATTACATCCTTCACCTTTAAATTCTCACATATACAAACAAGCATCCAAACACCCTCATTTACACACACACACTGATCTGGTTTGGTGCTTGTAATGATCTATATCACACTGCCAAACACACAATATTGATGCCCATTCCTGCCTCCAGGAGGCTACTGGTGAGAAACAAGTGAGAGAGAAGAGAGACAGACAATAATGGAGGGAGAGATAAGCAGGAGTGAATCTTATGAAGAAATTTCCGGGTCATATTTCACCACAAAATCGAGAAATTAAATGAGAAAATTTATGTCCCTAAAAATAAACAAAACAGTATTTCAAATAGTTTTGAGGTGAAATATGAACTTTCGACAGACAAAGATGTTCGTATGTTTGGCTTCTCCACATTTCTGCACACCCTGATCTGTCATGGTCACATGTTCACGTCCTCATCTGTACAGAACAATGTGTAAAAATACAA

Function

symbol description
arhgap39 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; and lens. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

GO: NA

KEGG:

id description
K20649 ARHGAP39; Rho GTPase-activating protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07885342_07908699.mRNA True 4697 mRNA 0.45 9 7884282 7909792

Neighbor

gene id symbol gene type direction distance location
CI01000029_07672445_07687240 DUSP10 coding upstream 196409 7672445 ~ 7687873 (+)
CI01000029_07653640_07663101 NA coding upstream 221181 7653334 ~ 7663101 (+)
CI01000029_07643406_07651059 NA coding upstream 232901 7643406 ~ 7651381 (+)
CI01000029_07602986_07608307 AIDA, AIDA.L coding upstream 275956 7602669 ~ 7608326 (+)
CI01000029_07540982_07543852 NA coding upstream 340387 7538942 ~ 7543895 (+)
CI01000029_07922221_07926151 NA coding downstream 12429 7922221 ~ 7927536 (+)
CI01000029_07933165_07944093 NA coding downstream 23373 7933165 ~ 7944093 (+)
CI01000029_07997857_08002279 PYCRL coding downstream 87904 7997696 ~ 8003097 (+)
CI01000029_08007965_08016092 EEF1DB, EEF1D coding downstream 97263 8007055 ~ 8016149 (+)
CI01000029_08019292_08036434 NA coding downstream 109500 8019292 ~ 8036758 (+)
G155620 NA non-coding upstream 48818 7835244 ~ 7835464 (+)
G155619 NA non-coding upstream 49090 7834982 ~ 7835192 (+)
G155615 NA non-coding upstream 52191 7831634 ~ 7832091 (+)
G155613 NA non-coding upstream 65932 7818140 ~ 7818350 (+)
G155611 NA non-coding upstream 67218 7816838 ~ 7817064 (+)
G155644 NA non-coding downstream 26837 7936629 ~ 7936921 (+)
G155645 NA non-coding downstream 29755 7939547 ~ 7940799 (+)
G155646 NA non-coding downstream 31095 7940887 ~ 7941365 (+)
G155647 NA non-coding downstream 31852 7941644 ~ 7941849 (+)
G155522 NA other upstream 246448 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 976850 6905834 ~ 6908633 (+)
G155083 NA other upstream 1393988 6431535 ~ 6490294 (+)
G155079 NA other upstream 1595884 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 2413936 5461497 ~ 5470346 (+)
G155627 NA other downstream 21688 7931480 ~ 7932177 (+)
G156007 NA other downstream 1055026 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location