CI01000029_07933165_07944093


Basic Information

Item Value
gene id CI01000029_07933165_07944093
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7933165 ~ 7944093 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07933165_07944093.mRNA
ATGGACGGGCCAATGCGTGTGTTGGTGACGGGCGGCAGCGGACTGGTGGGACGAGCCATAGAGCGGGTGGTGAAAGAGGGCGAAGGGAGAGAAGGAGAAGAATGGATATTCCTGTCATCCAAAGAGGCCAATCTTGTAATAAGCTTAACTATAAGAGAGTTTTCATTTGTGTCAAATGCACGATTTACATGTGCTGCTTTAGGAGCGCTGAAGAGACGAGAGCAGTCTTCCAGAAACATCGTCCGACACGTCATTCATTTGGCCGCTATGAGAGATAATGTGCACATCAATGACAACGTGCTGCACATGTCTCAGGAGTTCAAAGTGGTGAAGGTCGTTTCTTGTCTGTCTACATGTGTTTTTCCGGATAAAACCACCTACCCTATAGATGAGACCATGATGCACAACGGTGCCCCACATGCATCTAATTATGGTTATGCCTACGCCAAACGCATGATTGATGTCCACAACAGGGCGTGTTTTCAGCAATATGGTCTGCGATACACAGCTATCATCCCCACCAACATTTTTGGACCCCATGACAACTTCAACATTGAAGACGGTCACGTGATGCCGGGGTTGGTCCACAAGACGTACCTGGCAAAGAAGGAAGGTAAACCTCTGCAGGTCTGGGGTTCAGGTCGCGCCCTGCGGCAGTTCATCTATTCTGTGGATCTGGCTCGTCTGTTTGTGTGGGCTTTGAGGGAGTATGACGAGGTGGAGCCCATCATTGCGTCAGTCGGAGAGGAGGAAGAGCAGACCATAAAGGATGCTGTGGACGCTGTGGTTGAAGGGTTTGGGTTTAAAGATGTCTACACAGGAACACATGAGCGGGATCTTCTACCAAGCCCGGGCATCAACAACTCTTTGCTAACTCTGAGAG
>TU176710
GCATCCCAGGATGCATCTAATGAAATTGGCTGATGAATGGAATCTATACAAAGAATAAGCTTAACTATAAGAGAGTTTTCATTTGTGTCAAATGCACGATTTACATGTGCTGCTTTAGGAGCGCTGAAGAGACGAGAGCAGTCTTCCAGAAACATCGTCCGACACGTCATTCATTTGGCCGCTATGGTAGGCGGGCTCTACAGAAACATGAGACAGAACCTGGACTTCTGGGTAATTATTAACACTAAGTAACGTAAGGTTGCAAATATCTCTGTTGAATGACTGAACTGTATATTGACTGTACTGTTTTTTTTGTTCCCAGAGAGATAATGTGCACATCAATGACAACGTGCTGCACATGTCTCAGGAGTTCAAAGTGGTGAAGGTCGTTTCTTGTCTGTCTACATGTGTTTTTCCGGATAAAACCACCTACCCTATAGATGAGACCATGGTAAACTCAAACGCATACTTGTAATGGTTATGTTCAGCTTTGATTTAGTTTTCACTATGTTCTGTTCGTTTTGCCTGCCTTAGTTACACTCCCCATGTATTTAAGCCCTGTGTTTTGTTCAGTTTGTAACGAGCGAGATAAGATGTTGCCCCTTTTAAAGGGACAGTTCACCCAAAAATAAAAATTCTGTCATCATTTACTCACCCTCATGTCATTCCACACCCATAAGACTTTTGTTCATCAAAAGTTCACATGTTTCTCTGAAAAACAATGGTACAGCCAGTTATTTTACTTTGAAATGTGCGTCCCGTGTCAGAATGTTTATTTTTGTTTTGGTCTATGTGACTCCGCCCATTGCCAATTTAGCCAATAGTGTTTCAACACCCCGGGTTGCCAGCTGGTGGAAAACACAGCATATTGCATCCATGGAAGCCAGAAAATAAACTGGGTCAGAGATCGCATATTCTACCCCACCTAAAAAGCCTCAGCATCCATCAAAAAATTTCTATGAATGGGAGCATATTAAAACAGGGATAAATCAACTTACACAGTGTGTAAGTTTCCTCTCCTTCCATTGTCAATTGCGGTCGTTCCTGTTGCGTGTCCTCAATCTGGCAAACCTCGTGAAGGTCGAATCTGAGGAGGAAAGGGCAGGGTAAACATCTCTCTCCAATATTTTGAATTTTGACTGCAGTACCCATTTCAACCACTAGCTGTCAATATTACATACTGCACCTTTAAAGACTGCTTTTGTTGTTTACTCCTTCGTTGTGCGCTTTCATTACAGTCACTCAACTGTGACAACACTTGAATAGGCAGATGTTGTTTTCCTTTAAAGAGCTCACATCACGAGATGTGTTTCTTGATATTTTTTTCGTTCACTCAACTCAGCTCAAAGACTGTTAGTTGAAACTAAACTGTAAAAATGACCCTTGGATTTTTGATGTCAGAAGCATTAATGTACAGGACTGCCAACATGTATATACCTGTTTGGTGTTTAGAAACTTGTCCCGTCCCGTCCTGGTGAGAAATACTGATTAAAAATGCATAAATGTGAGCGATTTAAGCCAGTGATGTCTGATTGGTTTCATGAGTCTGTTTGCATGGATTGTGTTTTTGCTTTTACAGATGTGTTTCTCTCTTTCTGTCTCTGTGTCAGATGCACAACGGTGCCCCACATGCATCTAATTATGGTTATGCCTACGCCAAACGCATGATTGATGTCCACAACAGGTGAGTTTTGTTCTGTCTCAAAGTTCATTGGTTCTTGAATGGGTGTATCTCATATCCAGATGACATTTCTATTACGAAATTTTGCTTAGTGAGAATGAAGCCGCCTACGTTTAGACCCATTGTGGTTTTGTCTGCATTGTCATTGGACTGGTGGGCAAGACCGTTATACTGGATATTCAGGTTTCTAGTTTCACATTGTACATTCAGGCGACGTGTTTAAAGGTGCACTATATATATGTTCCAATAATATTGGCACCCTTGGTAAATATGAGCAAAGGCGCAGTGAAAATAAATCTGCAAAAAATTCACAAAATTCTAGTCTTTCATTGAAGTAAAGCAATTGAAATTGGGGGGAAACTCACATTATGAAATAAATGTTTTTCTCCAATGCACATTGGCCACAATTATTGGCACCCCTAGAAATTCTTATGAGTAAAGAATTCATATTCATATTTGAGCTTTTTAGCACACCAGGGTGACTAGGAGCATGAAATTGTCCAGCCATGAATTCCTGTTCCACAGGAGTACAAATATGAGGAAACAAAAAGGCCAAATTCCCTTAGTCATTCATCATGACGAGTAAAACCAAAGAATATAGTTCTGATGTGCAGCAAATGATTGTTGAGCTTCACAAAATAAAAAACTGTCTGTAAGAAAATAGCTGAAGCATTGAAAATCCCCATTTCCACTATCAGGACAATAATTAAGAAGTTCCAATCAACTAAAAATGTTACGAATCTGCCTGGAAGAGGATGTGTGACTATATCGTCCTAATGAGAGTTTGAGTGGACAAAGACTCTCCGAGGATCACAGCTGGAGAATTGCAGAGATCAGTTGAGTCTTGGGGACAGAAAGCCTGAAAAAAATGATCAGACAGCACAAGCTGTTCGGGAGGGTTTCAAGAAAAATCCTCCTCCGCTCATCCATAAACAATCTCCAGCATATTCAGTTGTCAGACACGACTGGAGCTTCAAACGGGACCGGCTTCTATGGTCAGATAAAACTAAAAAAAGAGCTTTTTGGCAGCAAACCCACCAGATGACTTTGGTGGAAACAGGGATGCAAAGTTGTGTTTAAATGTGTCAATTACCATGAAACTCAAACAATAAATGTAGTATTGGCTTTAAAAAATACCGTTAATGTGGCGTGACAGTAGCGCCTCAGGGCCTCTGGTTATCTTCTGTCATTAATGACACACCCTCATGTCGTTCCACACCTGTAAGACCTTTGTTCATCTTCAGAACACAAATTAAGATATTTTTCATAAAATCCGATGGCTCAGTGAGGCCTGCACTGCCAGCAAGATAATTAACACTTTCAGTGCCCAGAAAGCTACTAAAAACGATTCATGTGACTACAATGGTTCAATCTTAATGTGATGAAGTGACAAGAATACTTTTTGTGCGCCAAAAAAACAAAATAACGACTTTATCCAACAATATCTAGTGATGGGCGATTTCAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07933165_07944093.mRNA False 883 mRNA 0.50 8 7933165 7944093
TU176710 True 3147 lncRNA 0.40 1 7933383 7936529

Neighbor

gene id symbol gene type direction distance location
CI01000029_07922221_07926151 NA coding upstream 5629 7922221 ~ 7927536 (+)
CI01000029_07885342_07908699 ARHGAP39 coding upstream 23373 7884282 ~ 7909792 (+)
CI01000029_07672445_07687240 DUSP10 coding upstream 245292 7672445 ~ 7687873 (+)
CI01000029_07653640_07663101 NA coding upstream 270064 7653334 ~ 7663101 (+)
CI01000029_07643406_07651059 NA coding upstream 281784 7643406 ~ 7651381 (+)
CI01000029_07997857_08002279 PYCRL coding downstream 53603 7997696 ~ 8003097 (+)
CI01000029_08007965_08016092 EEF1DB, EEF1D coding downstream 62962 8007055 ~ 8016149 (+)
CI01000029_08019292_08036434 NA coding downstream 75199 8019292 ~ 8036758 (+)
CI01000029_08053844_08058278 NA coding downstream 109751 8053844 ~ 8058521 (+)
CI01000029_08072926_08079001 PHACTR1 coding downstream 128833 8072926 ~ 8079112 (+)
G155620 NA non-coding upstream 97701 7835244 ~ 7835464 (+)
G155619 NA non-coding upstream 97973 7834982 ~ 7835192 (+)
G155615 NA non-coding upstream 101074 7831634 ~ 7832091 (+)
G155613 NA non-coding upstream 114815 7818140 ~ 7818350 (+)
G155611 NA non-coding upstream 116101 7816838 ~ 7817064 (+)
G155632 NA non-coding downstream 7511 7951604 ~ 7961160 (+)
G155682 NA non-coding downstream 19589 7963682 ~ 7963894 (+)
G155683 NA non-coding downstream 22194 7966287 ~ 7966526 (+)
G155662 NA non-coding downstream 25411 7969504 ~ 8047016 (+)
G155667 NA non-coding downstream 115966 8060059 ~ 8063853 (+)
G155627 NA other upstream 988 7931480 ~ 7932177 (+)
G155522 NA other upstream 295331 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1025733 6905834 ~ 6908633 (+)
G155083 NA other upstream 1442871 6431535 ~ 6490294 (+)
G155079 NA other upstream 1644767 6282685 ~ 6288398 (+)
G156007 NA other downstream 1020725 8964818 ~ 9064541 (+)
G155644 NA non-coding downstream 100 7936629 ~ 7936921 (+)
G155645 NA non-coding downstream 3018 7939547 ~ 7940799 (+)
G155646 NA non-coding downstream 4358 7940887 ~ 7941365 (+)
G155647 NA non-coding downstream 5115 7941644 ~ 7941849 (+)
G155648 NA non-coding downstream 5738 7942267 ~ 7942481 (+)

Expression


Co-expression Network