CI01000029_09272016_09280223


Basic Information

Item Value
gene id CI01000029_09272016_09280223
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9271981 ~ 9280885 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_09272016_09280223.mRNA
CTGTAAATGACCCGGCGTTTGAGCGCCCCGCAGCGATGGAGGAGACTACAGAGGAGGGAATGCTGGGAAATGATGACGCTATTAAAAACACAACAGAAGCCGATGGATTCGGTTGCGCTCAGGCTGTCGCTTTGAGAACCGAAAAGGATCATGGCAGCGAATCGGCCGTACAGAACGACAGTATTGACGTCACCCTGGAGAACGAGTCCGTCTGGAGCCGCTTTCACAGCCTCGGCACTGAGATGATCCTGACGGAGCAGGGCAGACGCATGTTTCCCTGCTGCCGTTTCCGTCTGAGTGGTTTAGACCCCCATCTCAGGTACTTCCTAGTCATGGATTTTACTCCTTTGGATGATTTCCGACACAGATGGAATGGGAAAACGTGGGAGCGCGACGGAACGGCTGAACCTCACCCTCAGAGTCCGGAGTGTTTTCATCCCGACTCTCCGGCTCTGGGTCAGCACTGGATGGACGGCCCGGTGTCCTTCTATAAGGTGAAGTTAACGCACAGCACTCTGGAGCGGGACGCTGGCGTGCTTCTGCATCCCATGCGCCGCTACCAGCCGCGCCTTTTCGTGGTTCCCGCGAGCGTGTGTCCGGAGCGCTCCGTTCCGCTGGAGGGTCCCGACGTTCACATGTTCACCTTCCCTCTGACAGAGTTCTACGCCGTGACCAGCTACCAGAACCCGCAGATAACCCGGCTTAAAATCGACTGCAATCCCTTCATGTTGGCGTTCAGAGAAGACGGGCCGAGTGCTCGCCTCATCCAGAACAAACTCGGACTCGCTCTGACCGGCAGGTCTCCGTCACGGCCGTCTGTTGCCAATCACACCGGGAATAACGGAAAGGTGTCCGCTGGAGATCAACACCTCAGCTCAACACACGCGCATCAGGAATCTGAGTCCTGTGAAGGAGGAGGAATCCTGTCAATCGACAGTGAAGGTGGACGGCTCATCAGACCCAGAGATGAACCAGCAGCTTCTTTAGATTCTGAATCTACTGAAGACGTGATGACGGATCCGGCGAGACCTCATATCAGTCAACCACTGGGCGTAACCAGCCGCAGGAAACCCGCCGTTCCTTCGACCGGTCCGACTCTTTCTGCCGCCTGTAATGCCAAGCGTGTTTACCGGAGGCGCATGAAGGGAGCATGGAAAGCCAAGGCTAAATGGTGGTCCAATGTGAAGTACGCGAGAGCGGCTGCTGCCCGGGTCAACAAAGCCATGGACGTGTCCATGCAGCCGGACCTGGAGGACGTGGATGGTGTCTTGTTTGTGTCCTTCACTGCAAAGGAGGCGCTTGACGTTCATGTCGGAAACATGCGGAAATCTGTACAATCATCTCCATCATCACACACACAAAATCAGACGGAGAACTCGCTGCCTGATAAAGGTCTGAACGTGTCTGATCATGGTTTATCTGCAGCAGACAGAATCTCTGAGCATGAGCTTGTGTTACTGCAGCATCTGAAGCAGCTGAAGAACAGACAGATCCTTCATCCTGGGCTTCAACAAGTTGGGTTGAAACTGAGTCTTCTGGATCCAGCTGCTCCCATAGACCTACATTATCTCGGAGTTCACTTACCTTCGCCTGTTCTCGACCTCACGCCATCCTCCTATGCTCCTTTCGTGTCGCGGACCGGGAAGACTAATGATCTGACCCGGATCAAGGGCTGGATGGAGAAGTTCAGTTCCAAGAGTGCAGCTGACAAAGCACCTCTCAGCGCTCGCTTCAAGACCATCATCCTAAAGTGTCCAGCGGAAGAGCCAGAAAAGACGGCGGTGAAGACGACACGGTTCAGCACGTGGCACGACAACGACGAAGCTTGCGTGAAGCACTTCTGCCGGCTGGGCTGCGTCTGTCACAGTCTGAACAGAGAGATTCGCGGATCCACCCACTGCAGACGAGTGCAGTGCATGTTCAGCTGCGGCTGCTTCAAGCACAAGATCCTTCTGATCCGCTCACCAGAACTGAGCCAAACGCACAACACCAGCAGCCTGATGGCCTTCCCCATTGCTGACCAAGGATCAGACAGCAGGCCTGCGCCGGCTCTCCGAGTGACCAGCCTGTGGAAGAGGAGACTGCATGAGGACGACCTCGAGCCGCTCTTCACTCCTAAAGCAGCCGGTGTGCCGAGACGAGCGCAGCGCTTACACACCTACACGCCACGGCCCAATCCTCAGGTGCAGGAGAAGGATCCAGTTTACCTGTTCTTGGAGAGCATGATGACTTGTGCTCGTGTGCGAGAGTACAACAGTAACCCTCCGCCGCAGATCAATGACGTGTCTCAGTCGCATCTCACTAGTCCAGGCGTGACTGCAGGAGAGCCAGAGCCCACTAGAGTGCTGGAGATCATTTCTCGGTGTAACTGGGAGTCCCATCGGTCTCTGGTGCTGAAAGAACTGTTTCGCTGCATCAACATGAACTGCCTCTCATCTGTTTTCTCTGTTGACATCTACAAAGTGGAACTACTCTCAAAAAATCTTAAAATGGACGGGTCCAGCTCCATGTTAACCTACAAGGTCTGCGTGTCCCTCGCTGAGAAGCCAGGAAAGACTCGCGAGCCGAAGCAGGACGCGAAGAAGCGAGAGGATGCGCTGAGAAATCCTTCCTCTCAGAAAGTCAACAAACTAAATGAGCGTGTTAATGACAGTCTGAACACCATAGAGGCAAAGCACTTTCCTCTTCTGTCACGCGTCGTTCCTGCTGGTATTCTGAAGGCTGATAAGAAGACGTTAGTGGGTTCTGGTCCAATCAAGGTCAATGGGAAAACGTACACTCAGGCTAAACTGCTGCTGGGCCGAATGGGAGCGTTGCATCCAGCCAACCGTCTGGCAGCGTATGTGACGGGCAGGATAAAACCAGCGCCTCAAAACACCAGCCACGGCAGATCAGTTTCCAAAACGCCTCAGGTCAGGACGAGGTGTTCAAACTCGACTCCAGCGCGTGATCCCTCCAAACGTACAGTGAGGCAAGCAAACCAGAGTAAAGCAGCTTTCAAAGCGCCAGCTCCCCAAACTCTGGCCATCTTCAAGGCTCCTGATGGCATCAAAAGCACACCAACCCTCTTCATATTCTCACATGTTCCCAATCCTGTAGCTCCACCTCCAAACCCCACATCAACATCTAATCATATGACATCATCTAAGCCTGGGCTAGATCTGAACACTGTAGCCCCGCCCCCTTCTGTCCCGAACGCTGTAGCTCCGCCCCTCTCTGGCGCTGCACCACTGTCTAAGGGTGAGACGGTTCTCCCGGCTTCTGCTCTTCCTCCGGGACAGCAGGTGGTGCTGCAGCCAGTCGCGGGGATGACAGGAGTGAACATGTGTCAGTTCAACGGACAGATGATTCAGCTGGTGCCCGTCCCTGCAGCGCCACACATGCAGCTCCAGAGCAGCGCAGGAAGTGCTCAACAGGAAGCGCAAACACCTACACAACTACCTCAGATGACCGAATCTATATTAAATCCAGCACCTTCACAAAAGCCTTTTCCATTCATTGCACCCAGAATCCATCCAGTTCCGGGAAACAGCAGCTTTACCATTGGAAGTGGTGTACAGAACGGTTTTCTTGCTAAGAATAACACGTTTTCCTTCCGGATATGCCCGCCTGCTGCTGAGGGCAAGACCACGGGGCTCGAACAGACAGAATCAGGAGGATCCCCTTCCACTTTGTTACTTCCTGGAGGGTATAGGTTAATAAAACTGCCAATGTTGGTCCAACCCAGTGTGAATCCCGAGAGCAGCCCGTCTGGGTCACATGTGATGACCGAAAGCACCGAGAAATCAACCGCAAGCTCTGAAGAAAACCCTACGAGCTGCAGCCACGCTGAAGACCCAACCAGACACCAGCCCACCGTTTCTATCAAAACAGAACCAAGTGAAACTCCGACAGACGCTCCTCCAGTTGTCATAAAAGTAGAGCCTTACAGTGACTCGCTGCAAACAGACAAACATCACGACACGAGTGAACATCTGTGCAGTGACGGTGAGCAGGAGTATGTTCGCATTAAGATTGAGGAACCCTCCGAAATGAACCAGTCGAATCCGTCAGATGACAACCAGAACAAAGACTCGCCGCACTGCGTAACGGTCAAAATGGAGGAACCAGACGGTGAGACGGACATCAAACATTGTCTTAAAGCCTCTGAAAGCAGCGGCCCGGAACAGACAGAGAAATCGCCCTCCGTTTCTGACGCCCTCAGTGAAGCTCAACAACATCTGAAAACAAACAGTGTTGGTGATTTTTCATGCCCTTTATTCGTGAGTCCGATCTCGGCGTTCTCAAAGCTAACATTCGCTGTCCCTTTGCTTCCGGCTCAAACAAAAACACCAGAAGAGCCGCGTGAACACGCATGTGCTACACCTGCTGACGGCGGCGATTCTTTCAGCAGAAGGGCCAATCGCAGGCCTCAAGAGCTTCAGAACCGCATCCAGTGGCTGTGGAAAAGAAAACCACAAGCTTTGACCTCGGACGATCCTCCTGCTGTTTCTGATGGAGAACTCGCTGCAGGCGTTGATGACTCGAGCAGTGCGCTCATGTATTCCAGTGACGGATGGACCACTGAAGACAGTGTAAGTCGTCACTGAATCAGCCTCTGATTGGATGAAGAATGAGCGTCCAGTTGCATTAGCATACCAAATCCTCTAAAATCACATAACATGTATTATATCATCTCTGTCAGGCGGAGTTGGACAAAACGTTGAGGCTTTACATATGTCTGTGTCATTATTATTCACATTTTACCAAAATCAAGCTCAAATGGAGTTTTTGACCAGCGAATGTCAGACATATACATGTCTTGTCCGTCATTACTTTTTCATCAACTTAGAGGTTATGAAGTTTATTGTAGCTCAGTTTTTTCTGTCATTTGGCCAAAATATCATGTTAAGACTGTTTAAGACAGTATTAGTTGTGATCCGATGACAAAACCTAGACTAAGACACTCTTTTCCACTCCTCAAATACATAAAACATCAGCCTTTATATATATATATATATGTGTGTGTTTCTTGAGTGAAGAAAATGCTTTTTTTATTCAAACAAAGTTCTTTATTTATCATTGCATTGCAAACAAGCAGAGACGTTCCTTCATTCACAACAGAGGTGGGTGGAGTTATGAGGTTTGACTGACAGTTTGAGGAGCCGCGAGGTTTAGTCACAAGCTCTTTTTAATACTTTTGGTTAAATATTTGCAAAACCCACAGACCGATATAAAGGGTGACCGAGAGGAATGATTTATGAAAAACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_09272016_09280223.mRNA True 5251 mRNA 0.51 14 9271981 9280885

Neighbor

gene id symbol gene type direction distance location
CI01000029_09196479_09205243 LRFN5B coding upstream 66564 9195064 ~ 9205417 (+)
CI01000029_09183609_09186199 NA coding upstream 85508 9183033 ~ 9186473 (+)
CI01000029_09166838_09170965 NA coding upstream 101001 9166838 ~ 9170980 (+)
CI01000029_09159075_09162036 NA coding upstream 109517 9159075 ~ 9162464 (+)
CI01000029_09146276_09147817 NA coding upstream 124150 9146224 ~ 9147831 (+)
CI01000029_09284343_09295992 NA coding downstream 3458 9284343 ~ 9295992 (+)
CI01000029_09297723_09298362 NA coding downstream 16838 9297723 ~ 9298604 (+)
CI01000029_09322744_09351108 PAK5, PAK7 coding downstream 41859 9322744 ~ 9351748 (+)
CI01000029_09483322_09486962 NA coding downstream 202437 9483322 ~ 9486962 (+)
G156019 NA non-coding upstream 14419 9251198 ~ 9257562 (+)
G156116 NA non-coding upstream 21329 9250411 ~ 9250652 (+)
G156115 NA non-coding upstream 21711 9250064 ~ 9250270 (+)
G156113 NA non-coding upstream 31642 9240082 ~ 9240339 (+)
G156112 NA non-coding upstream 32500 9239255 ~ 9239481 (+)
G156025 NA non-coding downstream 74498 9355383 ~ 9356231 (+)
G156031 NA non-coding downstream 77695 9358580 ~ 9359289 (+)
G156128 NA non-coding downstream 121109 9401994 ~ 9446570 (+)
G156139 NA non-coding downstream 175395 9456280 ~ 9456796 (+)
G156007 NA other upstream 207440 8964818 ~ 9064541 (+)
G155627 NA other upstream 1339804 7931480 ~ 7932177 (+)
G155522 NA other upstream 1634147 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 2364549 6905834 ~ 6908633 (+)
G155083 NA other upstream 2781687 6431535 ~ 6490294 (+)

Expression


Co-expression Network