CI01000029_09196479_09205243 (LRFN5B)


Basic Information

Item Value
gene id CI01000029_09196479_09205243
gene name LRFN5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9195064 ~ 9205417 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_09196479_09205243.mRNA
GTATAAATGTCCCCAGAAAGCTTCAGACATGATGTTTTGTGAGAAATAATTGTTTGCACATGATTATTTGATTTGTTTGTACGTGTATTAAAGATAGCAGAAAAACAAACCTTTAGTCGTGTAGCTCACGTGTGTTTCACTTTGACGTCATCTGTTACGCTTCAAAACATTAAAACATTTATACACATTTCTCTTCCTGTAAAATAGACATATTTATGAATAGACATTTAAATAAACATCGATGACTCATCTTGCATGCGGGGTCACATACACATTTTTTAGACTAAATTGACTAGCAATAAAAGCAAATTCTGCTCCAATGTTATGTTTTTTATAGAAAATACGTCAATGCAAGAAACTGAAAAAAAGAAACTGGCGTAGAAACATTTTTCACACTGAAATTAAGAAATGGCAAGTAACCCATTGATTTTAACGCAAAATTTTGATCCAATAATGTTCAAAAAATCATTTTTTGGAGTTCAGTGAGATTTTTAAATGTTTAGTTTTAATTGTTTTAATGTTTCTGAAAGAGTCTCTTCTGCTCACCAAGGCTGTTTATTTGATCAAAAATACAGTAAAAATTGTGAAATATTATTCCAATGTAAATCAGCTGTTTTCTAAGTGAATATATAGTAAAGTGTAATTTATTCCTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGATGATTTGCTGCTCGAGAAACATTTATGATTATTATCAATGTTGAAAAGAGTCATATTTTTGTGGAAACTGATACATTTTATTTTTCAGGATTCTTTAATGAATATAAGAATATAAGAATTTTGAATATTCAAAAGAACAGCATTTATTTAACATTATAAATATCTTTACTGTCACTTTTGATCATTTTAATGCATCCTTGATGTATTAATTTCTTTCTAACTGGTATATTTAGAGTTTTTGGGCTATTTGGCTTTTCATAAAATACACTTTTAAGTGTTTATTTTATTGCACTTTATCTGTTTTCGTCTAGATTTTGAATTGCAGTGCATATCTTTAAAAGTTTTTATCTCCACTTCCGCAGCACTTACACACACCAGAATTTACAGTTTTATTCCTATCTATATTCTGAAGGTTTTTACTGAGGGTTTTGTTTATATCTGTTCATATGATATTTATTTTACATTTTATTCTTAAAACTTTTTTTTCTGTCTGTTGACAGTATTTAATGGAGTAATAATAAGAGAAATCCAAAATCCCCTCAGTAAAAGCTCTAATGCTGTAATGTCAATAAAATCAAACAAAACAATTTCTTTCACACTCACATCTCTGTTTCCTCCACAGGTTGTTTAACCAATACCCACAACCCAGATGGAGATGCTACTCATTTATTTGATGGTTGTTGTAATGGCGTTGAAAGCCCAGAAGATCCAAGTTTGTCCCAAGCGTTGCATCTGCCAGGTTCTGTCCCCAAATCTGGCAACCTTGTGTGATAAAAAGGGGCTACTGTTCGTCCCTCCAAACATCGACAGACGCACGGTCGAGCTCAGACTGGGCGACAATTTCATCACGGGCATCAAGCGTAAGGATTTCGCCAACATGACCAAACTGGTGGACCTGACTCTCTCGAGGAACACGATAGGCTCCGTCGCACCTCACGCTTTCAATGACCTGGAGAACCTGCGCGCACTTCATCTGGACAGCAACCGCTTGACGCATATAACGAACGATACCTTTAGCGGCATGTCCAAGCTGCACCACCTCATTCTCAACAACAACCAGCTCACACACATCCACATAGGAGCGTTCAACGACCTCCTGGCTCTGGAAGAACTCGATTTGTCCTACAACAACCTGGAAAGTGCGCCTTGGATCGCCATCCAGCTCATGATCAGCTTGCACACCTTAAACCTGGACCACAACATGATCAACTACATCCCCGAAGGAACCTTCTCTGGGCTTCAGAAGCTCAAGCGGCTGGACGTCACCTCCAATAAATTGCACAAGCTTCCACCCGATCCGGTCTTCCAGCGCGCAGGCGTTCTGGCTACATCAGGCATTTTGGGCCCGACGTCTTTCGCATTGAGTTTCGGAGGAAACCCGCTGCATTGTAACTGCGAGCTGTTGTGGCTCCGACGGCTGCGGCGCGAGGATGACCTGGAGACCTGTGCGGCGCCGCAACATCTCGCCGGACGCTATTTCTGGACCGTTTCTGAGGAGGAGTTCCTGTGCGAGCCGCCGCTCATCACTCGACACTCGCAAGAAACCCGCGCGCTGGAAGGCCAGCAGGTTTCCTTGCGCTGCAAAGCCCGTGGCGACCCGGATCCCATCATCCACTGGATCGCTCCCGACGGGAAGCTGGTGTTCAACTCCAGTCGTACCGTCATTCACGCCGATGGAACCCTGGATATCCTGATCAGCACAGTGAAGGACTCTGGATCTTTTACCTGCGTGGCTTCAAACCCGTCTGGAGAGGCTCAGCAAACAGTGGATCTGACCATCACCAAACTTCCGCATTTCACCAACGACACCAGTTTAGTTCAGGAGCCGGATCCGGGATCGTCCGACATTGCGACTTCTGCCAAGACCGGCGGAGACGGAGGCTCTTCGATGGGCAACACTAAGGGTGGACAGGAGAAGAGGGTCCTGATCTCTGAAATCACCTCTTCTACAGCTCTGGTGAAGTTCAACTTTCAGCGGAATATTCCAGGGATTAGGATGTTCCAGGTCCAATACAATGGCACTTACGATGACTCGTTAGTGTACAGAATGATTCCTCCGACCAGTAAAAGCATCACGGTCAACAATCTGGCGGCAGGCACGATGTACGACCTTTGCGTTCTGGCCATTTACGACGACGCCATGACCACGCTCACGGCCACACGCGTGGTGGGCTGCGTTCACTTCGCCACAGAGCCGCAGTACCTGCGCTGCCACTTCATGCAGTCGCAGTTCCTCGGCGGCACCATCGTGGTCATCATCGGTGGCGTCATCGTCGCGTCCGTGCTGGCCTTCATCATCTTCCTCATTGTGCGCTACCGAGTGTGCCAGCAGGAAGGGGCGGATAAAGGTGTGGAGCTCGGCGACATTCGCTCGCAGTCCGAGCTGCAGGTCTGCGGCGTCATCAAGTCCATGTCCAAGCAGATCCTGGGTCCGGATGCGTGTCGGAAGGTGTCGCCGCAGACGGAATCGGCCCCATCCCGGCCTTCCAAACCTGCTCTTCCGGACTGCACCGTCACCACGTCCGCCGCAAGCCACAGTTGGCATCCCGCCTCCCCTAGCCCGCTACGTCCGGTGCGTGCGGACACGCAAATCAACGTAGAGCCGGACAACACCAACAAGAACAACTCGGCCAAGGTGCATCCCACCGTACGCGCCTACTCGACCATGGTGACGCCAGCGTCCAGACGAGCGCAGCTCCAGAACCTCCACCACTACAAGACGGTGCCCGTGGGCTGTGTGCGGGTGAGCCGCCGTCACTCCCTCAACGTAGACTCGTGCAAACAGCCCGCGTATATGAGCCACCAGCACCCGTCTGGCAGCCTGAACCGCTCCAAACGCAGTTTATCAATGAGCGGCGGGGATATTCCCCAGATGGACGCCGGCGAGAGACGCAGCGGGAGATCCTCGCTGACCCAGTCGGAGAGCAGAGAGTCTGAGAGGCGAAATCCTCTATTTGTTCAAAGAAATGGCAAGAAGACGATGAAAGAAGAGCAGTTTTGTCCCATGAGTCCTGTGATTCACCTTCCACTCAGACTCAAGACGGCTTTACTCTCTCTCTGTCTCAAGGTTAAAGAGCAATGTCCGTCCATAAGAGAAAAAACAGTCCATTTCACCTCTATATGTGAGATTGTTATGCTTGTGGACAGATATGAGATGCATCAAGTTGTGGAATGAGTTACAGAATGGATGGGCTTGTTAAAATGAGCCGCTGTTGGCTGCGATGTCAATTAATGATTCATTAATTCGTGCCCATGAGGACGGCAGAGTCGTTTCTGTCACTTTCGCTCGTTATCGATATTAAAATGCTGTAATGTGATGGTCTCGAGTGAGTCCTGAAGGTTCACATTA

Function

symbol description
lrfn5b Is expressed in central nervous system and cranial ganglion. Orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_09196479_09205243.mRNA True 4079 mRNA 0.46 3 9195064 9205417

Neighbor

gene id symbol gene type direction distance location
CI01000029_09183609_09186199 NA coding upstream 8591 9183033 ~ 9186473 (+)
CI01000029_09166838_09170965 NA coding upstream 24084 9166838 ~ 9170980 (+)
CI01000029_09159075_09162036 NA coding upstream 32600 9159075 ~ 9162464 (+)
CI01000029_09146276_09147817 NA coding upstream 47233 9146224 ~ 9147831 (+)
CI01000029_09142383_09143514 NA coding upstream 51536 9142331 ~ 9143528 (+)
CI01000029_09272016_09280223 NA coding downstream 66564 9271981 ~ 9280885 (+)
CI01000029_09284343_09295992 NA coding downstream 78926 9284343 ~ 9295992 (+)
CI01000029_09297723_09298362 NA coding downstream 92306 9297723 ~ 9298604 (+)
CI01000029_09322744_09351108 PAK5, PAK7 coding downstream 117327 9322744 ~ 9351748 (+)
CI01000029_09483322_09486962 NA coding downstream 277905 9483322 ~ 9486962 (+)
G156099 NA non-coding upstream 12408 9182439 ~ 9182656 (+)
G156028 NA non-coding upstream 37619 9155752 ~ 9157445 (+)
G156091 NA non-coding upstream 69978 9124475 ~ 9125086 (+)
G156043 NA non-coding upstream 76431 9117716 ~ 9118633 (+)
G156087 NA non-coding upstream 78141 9116632 ~ 9116923 (+)
G156107 NA non-coding downstream 2956 9208373 ~ 9208598 (+)
G156109 NA non-coding downstream 21834 9227251 ~ 9227785 (+)
G156112 NA non-coding downstream 33838 9239255 ~ 9239481 (+)
G156113 NA non-coding downstream 34665 9240082 ~ 9240339 (+)
G156115 NA non-coding downstream 44647 9250064 ~ 9250270 (+)
G156007 NA other upstream 130523 8964818 ~ 9064541 (+)
G155627 NA other upstream 1262887 7931480 ~ 7932177 (+)
G155522 NA other upstream 1557230 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 2287632 6905834 ~ 6908633 (+)
G155083 NA other upstream 2704770 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017777 lrfn5b coding NC_007131.7 CM002904.2 54383838 ~ 54407669 (+)