G156043


Basic Information

Item Value
gene id G156043
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9117716 ~ 9118633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177166
ATGACGAACAAAATCACTTTAACCTGTGCAATTTAATGCTTTAATATCGGATCACACCCGTATCTATCATTTTAGTGCTCTAAGGTTAGGGTGTGTAAAAGCAATTAAAAGGCATGCAAACTTTTGTTCCAGTGTTTCCAAAAACATTAGAAATACCTTAATTTAAGGCCATTGTTTTTAAAGCAATTACTCGTTTCCTGCTGGGCTGAAAAAAAGTAGCTATAACTCTAAAAGTGTGTAGTTTTACCCGGGTAATCCACGGACGGGTGCAGCAGGTCCATTCCCGAGCTCAGGCTCAGTCCGGGGAGCGCGTACGGCGGCTGCTTCAGGTACGACATCATGTTGACGTGCTGGTGAAGGAATGTTCTGTCCTCCTGCGCGAGAAGCAGACGACTGGTCGAGCTGGTTATCTGCTGACATGGAAACTATCCGTTGACTGAGGGGGCGGGTTCGAGTCTCCGAGAACAAAACGCAGCGGTCATTTGGAGAGACGCGTATTGAGACGCAACAAGGCGCAAAGTAGCCAAAACATTCGAGGACAAGCTAATTGTCTCCGCATCACTGGGGGTCATTTGCGAAGACAAAGACCACCGTGGACAAGATAAATAGTGCTGATAACAATGAACAGTGACGCACTTCTTTATAAAGAGCCTCTCATTCAAATGCGAAGAGCAGCTTAACGAGGAACAATTCAACTTGAGGCGAATTTTAATTTCAGTTACACTTTATTGACACTCCCGGGGCTATTCTTCTTAATTAATTGCAGCCGGTAATTAGATTTACGCGGCGGGTCTCTTCTCAAAGTGTTAGAGCCATTTAGATAAAGTAAAACAAACACATTATATCCCTCCATTAGAGAAGAAAAGTATTAGGTGCAATCTAGAAGGAAATTTATTTACACATTTTTAACCGATTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177166 True 918 lncRNA 0.43 1 9117716 9118633

Neighbor

gene id symbol gene type direction distance location
CI01000029_09091229_09095666 PELI2 coding upstream 20703 9091103 ~ 9101802 (+)
CI01000029_09079841_09080368 ARF6.S, ARF6.2, ARF6, ARF6.2.L, ARF6B, ARF6A coding upstream 37081 9078993 ~ 9080635 (+)
CI01000029_09058596_09061088 FKBP3 coding upstream 56393 9058596 ~ 9061323 (+)
CI01000029_08990637_09003719 NA coding upstream 113937 8990557 ~ 9003779 (+)
CI01000029_08915550_08920146 NA coding upstream 197358 8914423 ~ 8920358 (+)
CI01000029_09132920_09139682 ACTR10 coding downstream 13937 9132570 ~ 9140319 (+)
CI01000029_09142383_09143514 NA coding downstream 23698 9142331 ~ 9143528 (+)
CI01000029_09146276_09147817 NA coding downstream 27591 9146224 ~ 9147831 (+)
CI01000029_09159075_09162036 NA coding downstream 40442 9159075 ~ 9162464 (+)
CI01000029_09166838_09170965 NA coding downstream 48205 9166838 ~ 9170980 (+)
G156087 NA non-coding upstream 793 9116632 ~ 9116923 (+)
G156010 NA non-coding upstream 50513 9060631 ~ 9067203 (+)
G156007 NA non-coding upstream 53175 8964818 ~ 9064541 (+)
G155980 NA non-coding upstream 236925 8880448 ~ 8880791 (+)
G156091 NA non-coding downstream 5842 9124475 ~ 9125086 (+)
G156028 NA non-coding downstream 37119 9155752 ~ 9157445 (+)
G156099 NA non-coding downstream 63806 9182439 ~ 9182656 (+)
G156107 NA non-coding downstream 89740 9208373 ~ 9208598 (+)
G156109 NA non-coding downstream 108618 9227251 ~ 9227785 (+)
G155627 NA other upstream 1185539 7931480 ~ 7932177 (+)
G155522 NA other upstream 1479882 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 2210284 6905834 ~ 6908633 (+)
G155083 NA other upstream 2627422 6431535 ~ 6490294 (+)

Expression


Co-expression Network