G155769


Basic Information

Item Value
gene id G155769
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8382868 ~ 8384341 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176859
ACACGGTATACAGTATTTTAAATCATGTTTAATCTTTGTTTCTGAATCTTTTTTTCCATTTGGAACATAGAAACAGCGAATGCTGGAGAAATGCAGGCAAAAGTAGTAACAGCACAATACATTCAACTCATCAACATTTATACAAACCATAAGGCCTAAGAAAGAGGAACAAACGTTCAGTCTGAACACCGACAGACGATGAACTGTAACCGTTTCATTTCATCTCTTGCACATAAAGATTACAAAGTCTGTTTTGTAGTGTCACCAGGTCTGTTCTCATGTTTTGGCAAATAATTATTATTGTTTTTTTTCGTTTAAAAACTGAGAAATGCAATAAATTACAATTTATAGACCCCAGAAAAAGGCCACACAGGTTTGTTTTTTACCTTTTTGGGAAGGTGTCAGTATTTTGATGGATGAATCTCATGAATGTTCAGGTCATATTTAACCCCCAAAAGACATTTCTAAAAAGAAAATTAAGGCCTTTTTGGGAACACACACACATATATATATAATGTACTTTTAATATAATTTTTTTAGATATATTTTTTTGAACATTTTTCTTGACATTTAAATATTTGTTTTGCCCAAATTATCATGACTGTAATTGCAAAACAAAAGATTGAATTGTCATGAAAATAATATCACAATGCAAAAACCAAAAAAAGGTTTCATTTTCCTAATGCAAAATTTAATTTCTTATTTTATTTCTTGATTGTGATTGGTCGTGGGGTGAAATATGACCTGAACAAGAGATTTTATTCCTTCTTGACACCTTAATAAAATCATTCCTTCATTTTTTTTTCTTTAACTTTGTCCATCACAACCGCACAATGACATCAAACATCACATCTCTGAAATGGAAGAACGGTTTTGATGATATATAAAGTATAATAAGCATCCGTCACATTCTGATATGAAACCTTGGATCCGTGAGACGTTCCTGTCGTGACCAGAAGAGGTCGCTGCCGTCCGTCTCACGCTGAACAATAACCACAAAAGAACCAGTTTTGTTGTTCATACTGAGAATTAAAGACAGACAGATTCGAATGAAAGAAGTATGACAGATAAAAAAACCCTCCAACATTGTTATTTTTGTTCATCAATTGCACAACAAGTGGAACATGTGGATAAAAAACATTAAAGCAAAGCATTCTGGGAACATCAAACACAGCCGTCTGCAGTCCTGATGTTTCCTGAATTGAACTACGACTGATCGGAGTGTTTATGGGAAACTCTTATTAGGAGAGGAAGGTTAACTGAGATTTCATGTGCCGTTTTTATGCCTCCTTCCTGAAGTCTGTGTTTCTCTCTCATTCCATCCAGTCGACCTCATCAAACTCGGAGTCGTCCTCGGAGTCGCTGTACTCCACAGCGATGCGGCGGGACAGGATGGTGGCCACGTCGTTCCCCACGCGCTCGTGTTTGGCCTCTTGTTCCCGCTGCTCCTCCACCTTCCTCAGCTGGATCCCTG

Function

NR:

description
leucine-rich repeat and calponin homology domain-containing protein 3 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176859 True 1474 lncRNA 0.37 1 8382868 8384341

Neighbor

gene id symbol gene type direction distance location
CI01000029_08367350_08368348 GPR6 coding upstream 14354 8366344 ~ 8368514 (+)
CI01000029_08346604_08357224 NA coding upstream 25235 8346401 ~ 8357633 (+)
CI01000029_08318488_08338631 NA coding upstream 43509 8318488 ~ 8339359 (+)
CI01000029_08288440_08301175 NA coding upstream 81511 8288440 ~ 8301357 (+)
CI01000029_08198433_08203489 NA coding upstream 179330 8198365 ~ 8203538 (+)
CI01000029_08425310_08441838 NA coding downstream 39456 8423797 ~ 8441847 (+)
CI01000029_08443106_08447917 CDC40 coding downstream 58617 8442958 ~ 8447917 (+)
CI01000029_08484998_08502958 NA coding downstream 100611 8484952 ~ 8503169 (+)
CI01000029_08506379_08516187 NA coding downstream 122038 8506379 ~ 8516305 (+)
CI01000029_08533907_08555317 PAK6 coding downstream 149566 8533907 ~ 8555969 (+)
G155758 NA non-coding upstream 1084 8381585 ~ 8381784 (+)
G155757 NA non-coding upstream 4578 8378071 ~ 8378290 (+)
G155753 NA non-coding upstream 8539 8374034 ~ 8374329 (+)
G155720 NA non-coding upstream 134155 8248489 ~ 8248713 (+)
G155725 NA non-coding upstream 137378 8244999 ~ 8245490 (+)
G155809 NA non-coding downstream 57799 8442140 ~ 8442351 (+)
G155845 NA non-coding downstream 181966 8566307 ~ 8567447 (+)
G155848 NA non-coding downstream 183274 8567615 ~ 8567913 (+)
G155851 NA non-coding downstream 205045 8589386 ~ 8593261 (+)
G155855 NA non-coding downstream 209206 8593547 ~ 8593956 (+)
G155627 NA other upstream 450691 7931480 ~ 7932177 (+)
G155522 NA other upstream 745034 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1475436 6905834 ~ 6908633 (+)
G155083 NA other upstream 1892574 6431535 ~ 6490294 (+)
G155079 NA other upstream 2094470 6282685 ~ 6288398 (+)
G156007 NA other downstream 580477 8964818 ~ 9064541 (+)

Expression


Co-expression Network