CI01000030_02094695_02098284 (RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB)


Basic Information

Item Value
gene id CI01000030_02094695_02098284
gene name RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2094695 ~ 2098757 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02094695_02098284.mRNA
ATGGGGACCCGTGACGACGAATACGATTATTTGTTTAAAGTGGTACTCATTGGAGACTCTGGTGTGGGGAAGAGTAACCTGTTGTCCCGTTTCACTCGGAATGAGTTCAACCTAGAGAGCAAGAGCACCATTGGTGTGGAATTCGCAACCCGCAGCATCCAGGTGGACGGCAAGACCATAAAGGCTCAGATCTGGGATACAGCAGGACAGGAGCGCTACAGAGCCATCACATCAGCGTACTACCGGGGTGCAGTTGGTGCTCTTCTGGTCTATGACATCGCAAAGCATCTGACTTACGAGAATGTGGAACGCTGGCTGAAGGAGCTGCGGGATCATGCGGATAACAACATTGTCATCATGCTGGTGGGCAACAAGAGCGATCTGAGGCACCTGAGGGCTGTGCCCACCGATGAGGCCAGAGCTTTTGCAGAGAAGAACAATCTCTCCTTCATCGAAACATCGGCTTTGGACTCCACAAATGTGGAGGAGGCATTTAAAAACATACTAACAGAAATCTATAGGATCGTGTCACAAAAGCAGATCGCCGACAGGTCCGTGCATGACGAGTCTCCTGGGAACAACGTAGTGGACATCAGCGTGCCGCCCACTACCGATGGGTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCCACTTCCCCCGGTTCCACCCCAACCCTTGGGCTTCAGTTCCCCTCTATTTATCTCAGCTTTGCTCCTGTGTGTTGTGCTATGGCTACGGCTCTTTCCTCTTTTTACCTCGTTGTGATTTCCACGCTAATTCTAGACATCCCTTAGAAGCGTGAATCTCTAGGTAACATTCCTTTTCCTTTTTTTGGGGGGGGGGGGTGTGTTTGTTTGTCCCTGTTTTTTTTTTCTTTACTATTATCCACTGTCTGAAGTCATGTTTGCTCGGCAAAATGTTTTTTCTTGGAAGTGATTATTCGGGCGCTGATCGTGTGATCCGCTCCTACGGAAAAGGGATGGTGAGGGATCAGTGTGTCTTTGGCTTCCAGCCACTCTGATGGTTATTCTCTGGGATCCACACTAAACGCCCGCCGTCTGTTGAGCCAGATCTCAGAGGGGATGTCTGATTTGAGCTTGAATGGGCAAGTTCTTAGGA

Function

symbol description
rab11ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including caudal vein plexus; gut; nervous system; pectoral fin bud; and pronephric duct. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).
rab11bb Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in cardiovascular system; nervous system; pharyngeal arch; pronephric duct; and spinal cord neural tube. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).
rab11b Enables GTPase activity; guanyl ribonucleotide binding activity; and myosin V binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; cellular response to acidic pH; and constitutive secretory pathway. Located in phagocytic vesicle.

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02094695_02098284.mRNA True 1130 mRNA 0.50 5 2094695 2098757

Neighbor

gene id symbol gene type direction distance location
CI01000030_02058151_02072387 RABGAP1L coding upstream 22185 2057847 ~ 2072510 (+)
CI01000030_02039525_02050052 RABGAP1L coding upstream 44465 2038298 ~ 2050230 (+)
CI01000030_02025674_02036478 NA coding upstream 56748 2023299 ~ 2037947 (+)
CI01000030_01985397_02017638 GPR52 coding upstream 76501 1985397 ~ 2018194 (+)
CI01000030_01972795_01974531 NA coding upstream 119261 1972795 ~ 1975434 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding downstream 5366 2104123 ~ 2109882 (+)
CI01000030_02113302_02119860 HNRNPM coding downstream 14200 2112957 ~ 2120066 (+)
CI01000030_02161055_02163914 POLR2E coding downstream 62006 2160763 ~ 2163914 (+)
CI01000030_02256592_02257308 NA coding downstream 157773 2256530 ~ 2257589 (+)
CI01000030_02260437_02262817 NA coding downstream 161623 2260380 ~ 2262817 (+)
G158412 NA non-coding upstream 4612 2086038 ~ 2090083 (+)
G158441 NA non-coding upstream 11463 2076526 ~ 2083232 (+)
G157855 NA non-coding upstream 184091 1910204 ~ 1910604 (+)
G157857 NA non-coding upstream 267661 1826741 ~ 1827034 (+)
G158397 NA non-coding downstream 6645 2105402 ~ 2159275 (+)
G158487 NA non-coding downstream 159469 2258226 ~ 2258504 (+)
G158488 NA non-coding downstream 160472 2259229 ~ 2259454 (+)
G158490 NA non-coding downstream 162796 2261553 ~ 2261843 (+)
G158508 NA non-coding downstream 205740 2304497 ~ 2312470 (+)
G157726 NA other upstream 456468 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1088008 1003114 ~ 1003795 (+)
G157227 NA other upstream 1738212 327649 ~ 356483 (+)
G157108 NA other upstream 1947842 116156 ~ 146853 (+)
G157076 NA other upstream 2076939 12878 ~ 17756 (+)
CI01000030_02277208_02282376 TM6SF2 other downstream 180356 2277208 ~ 2282743 (+)
G158416 NA other downstream 497119 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 914699 3018776 ~ 3043773 (+)
G159685 NA other downstream 2333043 4431800 ~ 4488526 (+)
G159816 NA other downstream 2418021 4516778 ~ 4517381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location