CI01000030_02161055_02163914 (POLR2E)


Basic Information

Item Value
gene id CI01000030_02161055_02163914
gene name POLR2E
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2160763 ~ 2163914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_02161055_02163914.mRNA
AAATAAAAACCACCAATCTAATTTAATATTGCATTTATTAGCTATTAACATGATATAATAATAATAATAATAATACATTTTAATACATGAAGTTAGTAAAAGCATACAAAAAAAGTTAAGTGCGTATTGTTTTGTACATACGAAATCAAAGTGCGCATTAGGCTGTGTGTGGCGTAATGTCCGACGTCATATACACGCGCCATCAGCGGGACTCAAACGTGCAGTAGAAGGATCGAATCAGCGGTCTGTTTTGATCGTAATATTTTTGTATTAATCATCTTTTTAGCGCGATATGGATGATGAGGAAGAGACTTACAGACTATGGAAAATTAGGAAAACTATAATGCAGCTTTGCCACGACCGTGGTTATTTGGTGACGCAAGATGAGCTGGATCAGACTCTTGATGAATTCAGAAGCCAGTTTGGAGACAAACCCAGCGAGGGTCGACCACGACGAACCGACCTCACCGTCCTGGTCGCCCACAACGACGATCCAACCGACCAGATGTTTGTGTTCTTCCCTGAGGAACCAAAGGTTGGTATCAAAACCATAAAGATGTATTGCCAGCGTATGCAGGAAGAAAACATCACTCGGGCCATTATTGTAGTCCAGATGGGCATGACGCCCTCCGCCAAACAGTCTCTGGTAGACATGGCACCAAAGTACATACTTGAGCAGTTTCTTCAGCAGGAGCTTCTAATCAACATTACTGAACACGAG

Function

symbol description
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

GO:

id name namespace
GO:0005736 RNA polymerase I complex cellular_component

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_02161055_02163914.mRNA True 721 mRNA 0.42 4 2160763 2163914

Neighbor

gene id symbol gene type direction distance location
CI01000030_02113302_02119860 HNRNPM coding upstream 40697 2112957 ~ 2120066 (+)
CI01000030_02104123_02108608 MARCH2.S, MARCH2 coding upstream 50881 2104123 ~ 2109882 (+)
CI01000030_02094695_02098284 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding upstream 62006 2094695 ~ 2098757 (+)
CI01000030_02058151_02072387 RABGAP1L coding upstream 88253 2057847 ~ 2072510 (+)
CI01000030_02039525_02050052 RABGAP1L coding upstream 110533 2038298 ~ 2050230 (+)
CI01000030_02256592_02257308 NA coding downstream 92616 2256530 ~ 2257589 (+)
CI01000030_02260437_02262817 NA coding downstream 96466 2260380 ~ 2262817 (+)
CI01000030_02277208_02282376 TM6SF2 coding downstream 113294 2277208 ~ 2282743 (+)
CI01000030_02289500_02291562 HAPLN4, HPLN4 coding downstream 125586 2289500 ~ 2292428 (+)
CI01000030_02423347_02426071 NA coding downstream 258854 2422768 ~ 2426301 (+)
G158397 NA non-coding upstream 1488 2105402 ~ 2159275 (+)
G158412 NA non-coding upstream 70680 2086038 ~ 2090083 (+)
G158441 NA non-coding upstream 77531 2076526 ~ 2083232 (+)
CI01000030_01972795_01974531 NA non-coding upstream 118706 1972795 ~ 1975434 (+)
G157855 NA non-coding upstream 250159 1910204 ~ 1910604 (+)
G158487 NA non-coding downstream 94312 2258226 ~ 2258504 (+)
G158488 NA non-coding downstream 95315 2259229 ~ 2259454 (+)
G158490 NA non-coding downstream 97639 2261553 ~ 2261843 (+)
G158508 NA non-coding downstream 140583 2304497 ~ 2312470 (+)
G157726 NA other upstream 522536 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 1154076 1003114 ~ 1003795 (+)
G157227 NA other upstream 1804280 327649 ~ 356483 (+)
G157108 NA other upstream 2013910 116156 ~ 146853 (+)
G157076 NA other upstream 2143007 12878 ~ 17756 (+)
G158416 NA other downstream 431962 2595876 ~ 2614293 (+)
CI01000030_03018776_03042194 FGF22 other downstream 849542 3018776 ~ 3043773 (+)
G159685 NA other downstream 2267886 4431800 ~ 4488526 (+)
G159816 NA other downstream 2352864 4516778 ~ 4517381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G150454 polr2e,polr2eb,LOC107669821 non-coding NC_035913.1 CM008316.1 8777697 ~ 8783068 (-)