CI01000030_04454078_04461414


Basic Information

Item Value
gene id CI01000030_04454078_04461414
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4451936 ~ 4462114 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_04454078_04461414.mRNA
GTATAAAATAGCTAAATAACACATTGCAACTAGCTTGCATTGCAAACTATCGTAAACACATACAAGTGTGTTAACTATGATTTATTTTATTTTATTTTTTCTGTCGGATTGATAGACTACTATTTGTATAACAATAATTTTACTACAAACACCATAAACTATAGTGTAGCAAAACCATGGTTAATTTGCGGTTACCAATAATTTTTATAAGAGAGGTAAAAAATCTTTCGAGCTATTTGACTGCGTTGTTATAAGCACAGCTGCTTTGTGTACAGAGGTTACCAAGGAAACGGCTTTATTTCTGCTGTTCCAGCGCCACCTACTGTCAGAGAGTCGATTAGGCAAGGCAAGGCAATTTTATTTATTTAGCAACCTAAATTTTATTTAGGTAATTCAAATTGCTTTACATAAACAGGAAACAAATACATAAGAATAAAAATGGAATGCATAAAAAAATAGTACAGTGCAGTGGTTCAATATTAATATTATAAAGCTTCGATTTAAAAACACTGCTTCATGAAGCTTCGTAGTGTTATGAATCTTTTGTGTCAAATAAGCGGTTCGGAGCGCCAAAGTCACGTGATTTCAGCAGTTTGACACGCGATCGGAATCATGATTCGACACAAAAGATTCATAACGCTCCGAAGCTTAATGAAGCAGTGTTTTGAAATCGGCCATCACTATGTAAGTTGTTATTTTGTTTTTTTGGCGCACCAAAAATATTCTCGTCGCTTTATAATATTAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACCTTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTGTGCAGGCCTCACCGAGCCATCGGACTTCAACAAAAATATCTTAATTTGCGGGTGACGGGTGTGGAACGGCATGAGGGTGAGTAATAAATGAAATTATTTTCATTTTTGGGTCAATTAACCCTTTAACCAATTAACTTACTGTACATGAATCAGATCATGAACTAGTATAGTCCAATTGTTGAACAATGAATCTTATGAGTCACCTCATAGTGAATCAAAAACATACTGCTTGACAAGTGGAGTCTAATTCCAGAAAGCAAACAAACAAAATTACAGTTGCAACCAGTATTTGGAATTTTGAGGGACTGACAATATGAGCCAGTTCTTTTTAATAAACCAAAAAGCATACAACTCAACCCTAACTAATGACTCTTAAGAGCTCATAGTGAACCAAAAGAATACTGGAAGCTGCATCCAAAATGTCAACTGATTGGAGTAGTAGGTCATAGCATTCATAAAACAGTAAGTGAAAAATACCCGGATGATTTACAACTTCCAATGAGTAACACAACTTCCACACATGACATGCAGTAAAAAAAATAGTAGGCTAAACGTGCGCACGATTTACTAATTCGCTCCCTCAATTTGCTAAATCATGTGCACGATTTATAAATCGAGGGAACGAATTAGTAAATTGTGCACGCGATTTAGTAAATCGAGGGAACAAAATAGTAAATTGTGCACACGATTTAGTAAATCGAGGGAACGAAATAGTAAATTGTGCACACGATTTAGTAAATCGAGGGAACGAATTAGTAAATTGTGCACACGATTTAGTAAATTGAGGGAACGAATTAGTAAATCGAGGAAACAAATTAGTAAATCGTGCACACAATTTACTTTTTTTTCTGCTGTCATGTGCGGGGCTCCGTACATTCTACAGTATATAGAACATACTTTTTAACAGTCTCAAAACAAGTTCTTTTTCAAATGAAGTACCTAATTAAAGAGTATGTGATTTTGGATTTTTCAGCTAAAGAGCTTAGATTAGTTTGATTCCTGAATGAATGATTCTAAGCAGTTATTTTTAGTGAATCAAAAAAACTAATGAATCTATTGCAGAGATTACTGAAATAAGTGCATAGTGCTCTGAATTCTGTTTAACACATTTTACCATGTTTACCACATCCACATATTTCCCCCCAATCCACATCTGAAAGCATTTCATGTGGGCCTATCTATGAGCAAGACCTACATGCTTTAATCTGATCCTATTGTACTCATTTCTACCTCTCCTCCTCATTAAGACCAGAGTCCTTTCCTTTGCTATTTTTAAACACGTTTGCCATTCTGTCAGCTGCTTCCTAAAATGGCCGCCTTTGTCCTGCACTCCTCCGGGCTTCCAGTTCTCTCTCTGAAGCTCTCTGTCCGGCTGGACGCCGGGTGCTGCTCGGACTATCTTGGCGAATTACCGACAATGCAGCTCTGGAGTGCCTCGCTTTGTGAGGCAGAGCAAAAGCCATCCCTGTCCAATACTGGATTAGGAACTGTGGATTGGCAGGCAGAGAAAACAGCTTTTATACTTTACAGAATAACACTAACCACAAAAATCCAGTGGAACCAATTACAAGTCTTCCCGATGCAGTTTGCCTTGCAAATCAGGCTTAACCCTTTCAACAGACCTTTCTCACACCTTTTAACTGGTGCAGGTCATGTTTCACAGGCCATGAAGGGGACAGATCCCCGGATCGAACTTGGGAACCTGGCTCTGTCCTTTCTGAGCCGCAGAAGGCTGTCAGCGCATCTGACGAGGGGTCCTCCTAAAACAGATCCCCTTACTCACACTTGGACTGGATTTCCCCCCCAGAATTCCCTGACGTCCCACTCCGTTACTGTCCGGCTCTCAGCCCCACACAGATCAGGAGACCGGGAGAAGCAGGGAATTCAGAAGAATCAAGTCCAGCTGTCTTGTCCTTCTGCAAATGTCCCCAATAAGCAACAAAAACAAACACGAATCTCCATTCGAGTCTTCCAACCTTGTAACAGTACCTCTAAACTACAGGGCTTCTTTGCTGAGATCTAAAAAGGCAAAGGAGAAGGAGGAACGGGCTTTGTTTTTAATCTAAATCTAGAGAGGAAGAAAAAAACACACAGGAAAGCAGGAAAGAACAGCAGGTCACTGGAAGATCCAGCAGGCTTTTCAGCAGCGAGCCCTAGACTGTAATATATTGTGCCTGTTGGCTTCAACACAAACACGACAGCCTGCTCAAGCTGCACTTAAGGTGGACCAGGCGAGATAGATAGAGGATAGATAGATGAAGAGATAGAGACAGAAATAGATACCAGTACATGCATACAACCAATTATACATGATCTTTGCTTCGAACAGCCGATTCATATCATCACACAGATAGACCTACAGGGGAAAAAACACAAATTAGATATCTCAGCTGTGATTCATAGATTAAATGGAGAGCAAATTGAAACCTGCTTAGTGAGCGTCCTGCTTATATTTTTTGACTGAAAAAAGACCACTTACCCAGTTAACCTCTCACGTGTCTTTTCTAAAGCAGATCTTAATGTCTCAAACTGTGCTCAGATTCGCCAAATCTGAAATCAAGATTTTAATATCAACAAATTATTCGAAATTCATCAAATTTCTTCAAATACATATTCCTTATATACATGTATTTTTAAGATATTTTTCAAGTATATATTATATACAGTATATATATGTGTGTGTGTGTGTGATTTTTTTTCCATTTAAAGTCAATTTTAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_04454078_04461414.mRNA True 3556 mRNA 0.38 5 4451936 4462114

Neighbor

gene id symbol gene type direction distance location
CI01000030_04393891_04405162 NA coding upstream 46318 4391950 ~ 4405618 (+)
CI01000030_04362878_04366419 PLPP2, PLPP2B coding upstream 84640 4362878 ~ 4367296 (+)
CI01000030_04332510_04342834 MIER2 coding upstream 108286 4332510 ~ 4343650 (+)
CI01000030_04271795_04300240 SHDB, SHD coding upstream 150892 4271795 ~ 4301044 (+)
CI01000030_04237332_04243409 SHC2 coding upstream 208149 4233688 ~ 4243787 (+)
CI01000030_04552559_04571086 NA coding downstream 87832 4549946 ~ 4573001 (+)
CI01000030_04575377_04586894 GNA15.1 coding downstream 112960 4575074 ~ 4586927 (+)
CI01000030_04588910_04589122 NA coding downstream 125770 4587884 ~ 4589177 (+)
CI01000030_04708812_04716224 NA coding downstream 246463 4708577 ~ 4717703 (+)
CI01000030_04730959_04734987 NA coding downstream 267587 4729701 ~ 4734987 (+)
G159748 NA non-coding upstream 122404 4329277 ~ 4329532 (+)
G159744 NA non-coding upstream 127835 4323890 ~ 4324101 (+)
G159742 NA non-coding upstream 132362 4319170 ~ 4319574 (+)
G159741 NA non-coding upstream 133163 4318377 ~ 4318773 (+)
G159740 NA non-coding upstream 133944 4317649 ~ 4317992 (+)
G159816 NA non-coding downstream 54707 4516778 ~ 4517381 (+)
G159858 NA non-coding downstream 155229 4617343 ~ 4617551 (+)
G159863 NA non-coding downstream 171074 4633188 ~ 4633460 (+)
G159841 NA non-coding downstream 216050 4678164 ~ 4680912 (+)
G159836 NA non-coding downstream 275688 4737802 ~ 4738938 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1408163 3018776 ~ 3043773 (+)
G158416 NA other upstream 1837643 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2169566 2277208 ~ 2282743 (+)
G157726 NA other upstream 2813709 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 3445249 1003114 ~ 1003795 (+)
CI01000030_07200104_07202258 GCGA other downstream 2737821 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3391971 7868292 ~ 7886228 (+)
G162088 NA other downstream 3775851 8237965 ~ 8239604 (+)
G161986 NA other downstream 4082468 8544582 ~ 8548325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021125 tle2b coding NC_007133.7 CM002906.2 21672656 ~ 21755966 (-)