CI01000030_04332510_04342834 (MIER2)


Basic Information

Item Value
gene id CI01000030_04332510_04342834
gene name MIER2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4332510 ~ 4343650 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_04332510_04342834.mRNA
TGTATGTTAAGTTCAATAGGAGTTCTACACAACATCCGGGCATTCCACCGCTTGCGCAGAATCGGAATGGCGGAGCTGTGCGAATGGGCTCCAAGGACCAACGGCACAGTCGTGTAGACATTTTCCACCAGGGCTATGCGGGGCCACTGGAGGCCCTTCCCCGGGCATCCACGTTCCTAGAGGAGCAGGACAGGAGCCTGGTGGCCCTGCGGAGACAGGCGGTAAAGATGGCAACCAAGACCCATTCAGGTGGTGAAATGCCCCTCGAGCAACTTCTGGCACTTTATGGGTACAACATGCCTGATCCGGTCCTGGAACAGCAACAGGAGCCAAATGAGCTGGCAGCTAGTCTGCCTGAAATGACACTGGACAAGGACATCATGGTGGGCCCCCAGTATCAGGCTATAATTCCTGCTCTCTGTACACACACTTTTTATGAAAGAGCCTATGAAAATGAGGACCAGTTGTTGTGGACCCCAGATGTGTTGTCCAGTCTGGCAGTAGAGAAGTTTTTGCTTGAAGTCCAGAGAAAAGGGAGTGACAATGGACCTACAAACACTCTGACCACAGGAGATATAGTCAAAGACAATGAGCAGGCTCTTTATGAACTAGTAAAATGTAACTTTAATGCAGAAGAGGCACTAAGAAGATATCGCTTTAATGTCAAGGTTTTCAGTGAAGAGCTTTGTGCCTGGAGTGAGGAGGAGTGCCGTAACTTTGAGCATGGTTACCGTGCCTATGGGAAGAACTTCCACCTCATACAGGGCAACAAGGTCCGCACGCGCTCGGTGGGTGAGTGTGTAGAGTACTACTACATGTGGAAGAAATCAGAGCGGCATGAGTATTTCACACAGCAGGCCACCAAGCTGGGTCGGAAAAAAGAGGATGCTGAGCCGGATGGGGATTCTGGCGATGTGGAAGGTGCCAATCAAGGTTTGCCAAGTCGGTCTTCCATTCAACTCCAGCCTCCATCGCCACCTGCTGTCATGGAGCTGGATAAACAAGGTTCTGAGCAAAACATTGGGGAGCTGGAACTATGTGCAGGTTCTTGTTCTAGCCCACAGGGGGAGCAGCTGTTCAGACAATTTTTGCCTCTCCCACAAGCGCTCCAGACGCCAGACTTAGCCTCCCCGTCCACCCAGCTTTACTTGTCCTCGCTCCCTCTTAGCCACTCCGTCCCTTCTTCCCAGCCAGACTCAGGGCTCCTGGGAGCAGGTCTTAACCAGCTACAACTGGGGTCTTTCCCTAAAGATCCTGCACCTGCCTGCTCAGAGTGTGTTGCCTCACGGAGGCTTCAAATTGACTTTTCTTTGCCTCCCTCGCCTGTCCCATCCGTCCCAGATTTTGGGGTACTCAGTAGCCTCTTGTGCCCACCTTCCTCCATCTGCTCCACACCCATCCAACACAGCAATTCACCCGTTCAGCGAAGGGAAACATTCCAGATCTAAGCAAATGTGACGACTGTCATTCACCTGGAGTTTGCAGTTGTCTTCAGGCTACTCCAGAAAAGTCTGAAATAAAGGGATAATTCAACCAAAAATGAAAATTATGCCACCGTTACTCACCCTCATGTCATTCCAAACCTGTTTGATTTATTTATTTTTTTTTTTTAAAGTTTTTGTCCATACAGTGAAAGTAAATGGGGTCCAGCTCCAAAAAATACATCAAGATAGCATAAAAGTAATCCAAAAGTACATTACTTTTATTTTATTTTCAGAAACTTCTTTCCCTTTTCTCCTACTTTTCCCCCAAAATATTCCACATTGACTTACTTTCTTCTGCAGAACACAGTAAAAGTAAGTCATACAGGTTTGGAAGGACATGAGGGTGAATAAATGAGGACAGAATTTTTATTTTTGCCTGAACGATCCCTTTAAGGAATGTGTTCAAGAATTCCTTGTTTAAACCATGCGACTTCTACTAAACTAGTAACCAGGTGTTTTAGGGAGCTGGTTGTCTCTGTCAGACTACTACATGCAATGAAAGTGTTTTTAACTACCTAATTGTAAGCTTCCTAATTGTAAGAAAAGTTTGATGGTCTCATTTTATAGCAACTGTTTGGTAAGCCCTTCATTGCATGTAGTTCTTATAAGCGCTCAAAATTTTTTAAATCGCTTATTTCTTTTTGTTAAAGCATAAAATGTTTTACTTGTAAAGAAGATATCATCAAGAATGAACTACTAATGCAGTTGTTTCATCCTTTCATTTGTTGCGATACCCTTTATGAGATTCTGGCTTTCCCGTTGTAGGTTCTTCTTTGTGCA

Function

symbol description
mier2 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human MIER2 (MIER family member 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_04332510_04342834.mRNA True 2264 mRNA 0.46 10 4332510 4343650

Neighbor

gene id symbol gene type direction distance location
CI01000030_04271795_04300240 SHDB, SHD coding upstream 31466 4271795 ~ 4301044 (+)
CI01000030_04237332_04243409 SHC2 coding upstream 88723 4233688 ~ 4243787 (+)
CI01000030_04219745_04223677 ODF3L2 coding upstream 107720 4219745 ~ 4224790 (+)
CI01000030_04183583_04213798 CPAMD8 coding upstream 118712 4183583 ~ 4213798 (+)
CI01000030_04163915_04171784 CRLF1B coding upstream 160603 4163915 ~ 4171907 (+)
CI01000030_04362878_04366419 PLPP2, PLPP2B coding downstream 19228 4362878 ~ 4367296 (+)
CI01000030_04393891_04405162 NA coding downstream 48300 4391950 ~ 4405618 (+)
CI01000030_04454078_04461414 NA coding downstream 108286 4451936 ~ 4462114 (+)
CI01000030_04552559_04571086 NA coding downstream 206296 4549946 ~ 4573001 (+)
CI01000030_04575377_04586894 GNA15.1 coding downstream 231424 4575074 ~ 4586927 (+)
G159748 NA non-coding upstream 2978 4329277 ~ 4329532 (+)
G159744 NA non-coding upstream 8409 4323890 ~ 4324101 (+)
G159742 NA non-coding upstream 12936 4319170 ~ 4319574 (+)
G159741 NA non-coding upstream 13737 4318377 ~ 4318773 (+)
G159740 NA non-coding upstream 14518 4317649 ~ 4317992 (+)
G159816 NA non-coding downstream 173171 4516778 ~ 4517381 (+)
G159858 NA non-coding downstream 273693 4617343 ~ 4617551 (+)
G159863 NA non-coding downstream 289538 4633188 ~ 4633460 (+)
G159841 NA non-coding downstream 334514 4678164 ~ 4680912 (+)
G159836 NA non-coding downstream 394152 4737802 ~ 4738938 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1288737 3018776 ~ 3043773 (+)
G158416 NA other upstream 1718217 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 2050140 2277208 ~ 2282743 (+)
G157726 NA other upstream 2694283 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 3325823 1003114 ~ 1003795 (+)
G159685 NA other downstream 88150 4431800 ~ 4488526 (+)
CI01000030_07200104_07202258 GCGA other downstream 2856285 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3510435 7868292 ~ 7886228 (+)
G162088 NA other downstream 3894315 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location