CI01000030_04163915_04171784 (CRLF1B)


Basic Information

Item Value
gene id CI01000030_04163915_04171784
gene name CRLF1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4163915 ~ 4171907 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_04163915_04171784.mRNA
ATGGATTATGCGTACGCGCGCTCCCATCAGCATGACAAGAATCGAGTTGAGAGCGCGCGCGACAGACAAATGACAATTTCAGTCATTATGTTGCTTTTTGTTGCGTTTCTTCCATATGCGCTCACAGCACACTTGGCTGTCATATCCCCCCAGGATCCAGTGCTTCGCATCGGCTCGAGCTTGACTGCAGTGTGCACTGTTAGCGCCGAGCTGGAAATAACAGCTAGATCCTTGTACTGGACGCTGAACGGCAGACGTTTGGCAAGAAACACTTACAGAGTCCTGAGCCCAACCGAATCAAGCGTCACACTTCATCAACTCAATGGCTCCTTGCAGCAGTCAGGAGACAACCTGGTTTGCCACCGAAGCAACGGAGAAGTGTTGGCCGGATCGTGTATTTATGTTGGGTCACCCCCTGAGAAACCCGTCAACCTGACATGCTGGTCACGAAACACCAAAGACCTCAGCTGCAGATGGAGTCCAGGGAGTCAAGGAGAAACGTTCATCAATACCAAATACATCCTCAAGTACAAACTAAAATGGTACGGTAAAGAGAAAGACTGCGAGGACTACACGGGACAGCCATATATGTGCTACGTTCCACGCGACCTTGCCATTTTTACGCCATATGAAGTCTGGGTGGATGCGTCCAATCAGCTTGGATCTGCCACTTCTGATGTGGTCACCTTAGACATTTTAGATGTAGATCCGCCTCCTGATGTCCTTGTGAGCCGTGTTGGTGATCTGGAAGATCAGTTAAGTGTCAGTTGGGGCAGTCCTCCTGCCCTGAAGGACTACCTGTTTCAGGCCAAGTATCAAATACGATACCGTGTGGAGGAGAGCGACGAATGGAAGGTGATAGATGATGCTGGGAACCAAACGTCATGTCGGTTAGCAGGTCTCAGAGCAGGTACTGTATATTTTGTCCAAGTACGCTGCAACCCAGTGGGCATCTACGGCTCGAAGAAGGCAGGTATCTGGAGCGACTGGAGCCACTCGACTGCTGCGTCAACACCTGGCATTGAGGATGTTATTAAGCTCTGTTTTATGCCAAGCAATATGAGTTATGGCAAGTCTGAGCTCCTCCTCCTGCATTCTAAGTTTAATGCTTTGGAGCTCATTAGCAGAGAGATGAAAGGTCACATAGTGGCTCGTGCGATTCAAAGCCCAGTGAGCACAACTCAACGCTACGAAAGGAGCTCAAGCAGTTTTTTGGCTGGATGCGCAAACACTCTTACGGCTGTACGGACGTCAGCATCAAACTCTACGACCAATGGCGTGTCTGGCTGCAGAAAGCCCAGAAAACACACGACCAGGTTAGACTGTGCAGCAAAGCTTCAGCTGCGATCCAACCAAGCCCGAGAAGTCTTGTGTGGCGTACTCGAACGCTATCCGACATCCGCTGCACGCTCTCTGAACCGATTCAGTGGTTACTGTTGCTTTGGCACTGACGACTGTTGGGAAACTTGGGTCGCTTCATTAGTCACACTGTCCTTTGAAGAGCACGATGTAACTGCCACAAGAATGGCTGGTACCAATTACGCTTCTCTGTCCCCATATATCAACTCATCACATTCACTTGTAAATGCCATTGTCTTGCCTTTCAGGTACTACAAAGCGGTAAATCATAGTGAAACTCTAAAGAAGGCTTGGGAGAGTTTGCAGGGGCCTGCGACGACAAGGTTTTTATCACTCTCCAGTGCTTGGGACGTTTCATCTGGATGAGCCAAGACTCTCTGAAGGAATCCACAAGGAGATCGTAGTTTGGCGACATGATCTACTGCTATAGCCCCCGTCAAATATGTCAAAGGAAGTGCTTTTGTCTCAGACATGTTATTTATAAGGGCA

Function

symbol description
crlf1b Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

NR:

description
class I helical cytokine receptor number 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_04163915_04171784.mRNA True 1848 mRNA 0.49 9 4163915 4171907

Neighbor

gene id symbol gene type direction distance location
CI01000030_04070253_04083457 NA coding upstream 80023 4069447 ~ 4083892 (+)
CI01000030_03926592_03926762 NA coding upstream 236710 3926592 ~ 3927205 (+)
CI01000030_03917423_03918481 NA coding upstream 245241 3917423 ~ 3918674 (+)
CI01000030_03915675_03916993 NA coding upstream 246922 3915286 ~ 3916993 (+)
CI01000030_03909138_03910046 NA coding upstream 253869 3909038 ~ 3910046 (+)
CI01000030_04183583_04213798 CPAMD8 coding downstream 11676 4183583 ~ 4213798 (+)
CI01000030_04219745_04223677 ODF3L2 coding downstream 47838 4219745 ~ 4224790 (+)
CI01000030_04237332_04243409 SHC2 coding downstream 61781 4233688 ~ 4243787 (+)
CI01000030_04271795_04300240 SHDB, SHD coding downstream 99888 4271795 ~ 4301044 (+)
CI01000030_04332510_04342834 MIER2 coding downstream 160603 4332510 ~ 4343650 (+)
G159675 NA non-coding upstream 13089 4147039 ~ 4150826 (+)
G159692 NA non-coding upstream 18866 4144221 ~ 4145049 (+)
G159689 NA non-coding upstream 21126 4142384 ~ 4142789 (+)
G159727 NA non-coding upstream 24676 4138983 ~ 4139239 (+)
G159714 NA non-coding upstream 35138 4128383 ~ 4128777 (+)
G159673 NA non-coding downstream 521 4172428 ~ 4181386 (+)
G159740 NA non-coding downstream 145742 4317649 ~ 4317992 (+)
G159741 NA non-coding downstream 146470 4318377 ~ 4318773 (+)
G159742 NA non-coding downstream 147263 4319170 ~ 4319574 (+)
G159744 NA non-coding downstream 151983 4323890 ~ 4324101 (+)
CI01000030_03018776_03042194 FGF22 other upstream 1120142 3018776 ~ 3043773 (+)
G158416 NA other upstream 1549622 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1881545 2277208 ~ 2282743 (+)
G157726 NA other upstream 2525688 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 3157228 1003114 ~ 1003795 (+)
G159685 NA other downstream 259893 4431800 ~ 4488526 (+)
G159816 NA other downstream 344871 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3028028 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 3682178 7868292 ~ 7886228 (+)
G162088 NA other downstream 4066058 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020404 crlf1b coding NC_007133.7 CM002906.2 21152847 ~ 21165192 (+)