XLOC_008888 (zgc:171901)


Basic Information

Item Value
gene id XLOC_008888
gene name zgc:171901
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 672984 ~ 684911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017560
GATTTTAGACAGGGGACTTTTATGTCGTTTCGTCGGTGACGTCATCAGTCAGCTCCGCGCTCCTGTTTGTTCTGAACAGGCTCGACCAAGAGAACAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagatgtggagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagACCTGATGCTTCTGAAAGAGGAAAATCAGGACCTGAAAGATGTGCAAGAGGAGGATCAGCCTGAAGAACAACTTAATCTCAAAACTCGGACAACAAATAAGTCTTACTTGCAAAAAAGTGTCCCGGAGACTAATTCCAGTACCTGCcagcagtgtggaaagagtttcagtggGAAGCGAAACCTTGAGGtgcacatgaggattcacactggagagaagccgttcacCTGCCAACACTGTGGGAAGAGCTTCACTCAAAAGGGGAACCTTAAAAGCCACATGATAATCCACAGCGGAGAGAAGCCTTACGCCTGCCAAATCTGTGGGAAGAAGTTTGCTCAAAAACGAAACCGCGCCGACCACATGAGACTGCACACCGGAGAGAAGTCCTTCACCTGCAACctgtgtggaaagagcttcactcAGAAAGGCAATCTTAAAAGCCACTTGATCATTCACAGCGGAGAGAAGCCTTACAGCTGCCAACAGTGCCAAAGCACCTTCACTCAAAAGGTGCACCTTGAACAACACATGAAAGTCCACAGCGGAGAGAAGCCGTTCACATgcgatcagtgtggaaagagcttcacgcTCAAAGACTCTCTCGGCTCCCACATGAGAGCTCACACAGGAGAAAGCCAGTTTATCTGTCATCAGTGCGGGAAAAGCTTCAATCACAAAAAAAGCTTCAATATTCACCTGAGAGTTCACACCGGAGAGGAGCCGTACACGTGCTGTTGGTGTGGACGGAGTTTCAGATATAAAGCATCCCTCGATGTCCACATTAGAGTTCACACAGGGGAAAACCCTCATACCTGCCGACTCTGCGGGAAGAGCTTCACACAGAAGGGCTCTCTTAAGGCACACATGAtcattcacactggagagaagccgttcacATGTGTTCAGTGCGGAAAGAGCTTTAGACGAAAACTAACCTTGAACGAACACGTGAAGATTCACATTGAGAGTGAACTATTAGATCAATGTAATGCAGCTACATCAACGTGTAAAGATTCACTAACATGAAACACTTGAAGATACTAAAGTAACTGGAGAGATGTTTGCCAGCACTACCTGCAAGATTAGCGCTTCCTTGATTGCTGCAGTCTTGAAGATTTGTGCCCCAACCCTACctaaacacacttgaacaagctaatcaaggacTTAGTGTTAAACTGTGGCAACACGGCACCTCATCAGTGTGTAAAGATTCACCTACAAGAAACACTTGAAGACACTGTGAAGTACCTGAAAACATGTTTGCCAGCACTACCTGCAAGCTGAGCGCTTCCTGGATCGTTGCAGTTCTGAAGATTTGTGCCTCAACCCTATTTAAACACACTTGAACGAGCTAATCAAGGTCCATCGAGGTGTCAAACTGCACTTTTCGGCTCATTGACTTTAATTCATAAGCATGCCAATTGCAGCAGACCAAAAACGCAAGTTCTGACAACAAGTTTTTGATGTCAGTGTattcgaaagttcaagcttggtgaactctgacctgcaacaTCACATCACGTGATTGTGTGAGACCGATAGAAGAGCAAAGcttgacctctctgtacagaaaatTGAAATATGGAGCAGTTGCTCGATTTATTAATGTCGGATAATCTTTAATCCTGCCCTTTTTCGCAGCGCATTATTCAGTGTGTCTGTCCACGTTTTGCACTTGTTTAAATTCTATTTAATGTAGCACACATAATTGCCGTCTTTTTGTGGCTATCGTGACCTGACGCTTGACACTGTGAACATCAGTAAAGATCGTCAATTGTT
>TCONS_00017561
ttttatatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttaatacagagttattgtatataattaaattgtaattttcaTTCGACAGTTTAACCTTTTTAAGCACATTAGCGGTCAGCCAGTATTTTGTGCTTTTAGACACGGGACTTTTATGTCGATTTGTCAGTGACGCCATCAGGCGGCGGCGCGCTCCTGACTGTTGTGTTATCCAAACGTGAACGAACGCTATTTTGACGTCTGATATACGAATAAGAGAAAAGCtgcgatttatttattcattttttttaatttttatcgtgaagcagtttattattaacaaaaaatcaGTCGCTGGTAAGCAGAAAATTAGATTGTTGAATTTGACAAGAGTTTTAGTTCATTTTTCCCTGTTACTGATTGTCTTCATCTTGATCTTGAcagttttatgttaaatattatgaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagACCTGATGCTTCTGAAAGAGGAAAATCAGGACCTGAAAGATGTGCAAGAGGAGGATCAGCCTGAAGAACAACTTAATCTCAAAACTCGGACAACAAATAAGTCTTACTTGCAAAAAAGTGTCCCGGAGACTAATTCCAGTACCTGCcagcagtgtggaaagagtttcagtggGAAGCGAAACCTTGAGGtgcacatgaggattcacactggagagaagccgttcacCTGCCAACACTGTGGGAAGAGCTTCACTCAAAAGGGGAACCTTAAAAGCCACATGATAATCCACAGCGGAGAGAAGCCTTACGCCTGCCAAATCTGTGGGAAGAAGTTTGCTCAAAAACGAAACCGCGCCGACCACATGAGACTGCACACCGGAGAGAAGTCCTTCACCTGCAACctgtgtggaaagagcttcactcAGAAAGGCAATCTTAAAAGCCACTTGATCATTCACAGCGGAGAGAAGCCTTACAGCTGCCAACAGTGCCAAAGCACCTTCACTCAAAAGGTGCACCTTGAACAACACATGAAAGTCCACAGCGGAGAGAAGCCGTTCACATgcgatcagtgtggaaagagcttcacgcTCAAAGACTCTCTCGGCTCCCACATGAGAGCTCACACAGGAGAAAGCCAGTTTATCTGTCATCAGTGCGGGAAAAGCTTCAATCACAAAAAAAGCTTCAATATTCACCTGAGAGTTCACACCGGAGAGGAGCCGTACACGTGCTGTTGGTGTGGACGGAGTTTCAGATATAAAGCATCCCTCGATGTCCACATTAGAGTTCACACAGGGGAAAACCCTCATACCTGCCGACTCTGCGGGAAGAGCTTCACACAGAAGGGCTCTCTTAAGGCACACATGAtcattcacactggagagaagccgttcacATGTGTTCAGTGCGGAAAGAGCTTTAGACGAAAACTAACCTTGAACGAACACGTGAAGATTCACATTGAGAGTGAACTATTAGATCAATGTAATGCAGCTACATCAACGTGTAAAGATTCACTAACATGA
>TCONS_00017562
GATTTTAGACAGGGGACTTTTATGTCGTTTCGTCGGTGACGTCATCAGTCAGCTCCGCGCTCCTGTTTGTTCTGAACAGGCTCGACCAAGGGGCCTCCACTGGCTGCCTGTCCAATTCAGAATTGATCTTCAGTGCTTTCACTGGTATATAAATCCCTTCATAATCCAGTCCCAACCCATCTTTCGGAGCTGTTGCACTTTCAGATCAAGTGATTAAATCTTCTTGTAGCTCCTCAGTCCAGACTGAAACACAGATgggacagagctttctctgtgAGAACAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagatgtggagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagACCTGATGCTTCTGAAAGAGGAAAATCAGGACCTGAAAGATGTGCAAGAGGAGGATCAGCCTGAAGAACAACTTAATCTCAAAACTCGGACAACAAATAAGTCTTACTTGCAAAAAAGTGTCCCGGAGACTAATTCCAGTACCTGCcagcagtgtggaaagagtttcagtggGAAGCGAAACCTTGAGGtgcacatgaggattcacactggagagaagccgttcacCTGCCAACACTGTGGGAAGAGCTTCACTCAAAAGGGGAACCTTAAAAGCCACATGATAATCCACAGCGGAGAGAAGCCTTACGCCTGCCAAATCTGTGGGAAGAAGTTTGCTCAAAAACGAAACCGCGCCGACCACATGAGACTGCACACCGGAGAGAAGTCC

Function

symbol description
zgc:171901 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000074365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017560 False 2016 mRNA 0.45 3 672984 679478
TCONS_00017561 False 1643 mRNA 0.41 2 673737 684911
TCONS_00017562 True 810 mRNA 0.46 4 674376 679478

Neighbor

gene id symbol gene type direction distance location
XLOC_008887 si:ch211-210b2.2 coding downstream 3508 665156 ~ 669476 (-)
XLOC_008886 si:ch211-210b2.4 coding downstream 12590 647854 ~ 660394 (-)
XLOC_008885 NA coding downstream 39576 622709 ~ 633408 (-)
XLOC_008884 si:ch73-144d13.7 coding downstream 55187 611229 ~ 617797 (-)
XLOC_008883 si:ch73-144d13.5 coding downstream 68631 586605 ~ 604353 (-)
XLOC_008889 zgc:174574 coding upstream 96 685007 ~ 704465 (-)
XLOC_008890 si:dkey-7i4.21 coding upstream 37564 722475 ~ 1003553 (-)
XLOC_008891 si:dkey-7i4.19 coding upstream 51611 736522 ~ 739229 (-)
XLOC_008892 im:7143333 coding upstream 57287 742198 ~ 745672 (-)
XLOC_008893 NA coding upstream 128185 813096 ~ 815019 (-)
XLOC_008874 NA non-coding downstream 243337 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 247228 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 294797 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 323417 349451 ~ 349567 (-)
XLOC_008894 NA non-coding upstream 133280 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 152104 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 185050 869961 ~ 909037 (-)
XLOC_008897 NA non-coding upstream 190417 875328 ~ 875985 (-)

Expression


Co-expression Network