RNA id: TCONS_00017561


Basic Information

Item Value
RNA id TCONS_00017561
length 1643
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_008888
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 672984 ~ 684911 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttatatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttaatacagagttattgtatataattaaattgtaattttcaTTCGACAGTTTAACCTTTTTAAGCACATTAGCGGTCAGCCAGTATTTTGTGCTTTTAGACACGGGACTTTTATGTCGATTTGTCAGTGACGCCATCAGGCGGCGGCGCGCTCCTGACTGTTGTGTTATCCAAACGTGAACGAACGCTATTTTGACGTCTGATATACGAATAAGAGAAAAGCtgcgatttatttattcattttttttaatttttatcgtgaagcagtttattattaacaaaaaatcaGTCGCTGGTAAGCAGAAAATTAGATTGTTGAATTTGACAAGAGTTTTAGTTCATTTTTCCCTGTTACTGATTGTCTTCATCTTGATCTTGAcagttttatgttaaatattatgaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagACCTGATGCTTCTGAAAGAGGAAAATCAGGACCTGAAAGATGTGCAAGAGGAGGATCAGCCTGAAGAACAACTTAATCTCAAAACTCGGACAACAAATAAGTCTTACTTGCAAAAAAGTGTCCCGGAGACTAATTCCAGTACCTGCcagcagtgtggaaagagtttcagtggGAAGCGAAACCTTGAGGtgcacatgaggattcacactggagagaagccgttcacCTGCCAACACTGTGGGAAGAGCTTCACTCAAAAGGGGAACCTTAAAAGCCACATGATAATCCACAGCGGAGAGAAGCCTTACGCCTGCCAAATCTGTGGGAAGAAGTTTGCTCAAAAACGAAACCGCGCCGACCACATGAGACTGCACACCGGAGAGAAGTCCTTCACCTGCAACctgtgtggaaagagcttcactcAGAAAGGCAATCTTAAAAGCCACTTGATCATTCACAGCGGAGAGAAGCCTTACAGCTGCCAACAGTGCCAAAGCACCTTCACTCAAAAGGTGCACCTTGAACAACACATGAAAGTCCACAGCGGAGAGAAGCCGTTCACATgcgatcagtgtggaaagagcttcacgcTCAAAGACTCTCTCGGCTCCCACATGAGAGCTCACACAGGAGAAAGCCAGTTTATCTGTCATCAGTGCGGGAAAAGCTTCAATCACAAAAAAAGCTTCAATATTCACCTGAGAGTTCACACCGGAGAGGAGCCGTACACGTGCTGTTGGTGTGGACGGAGTTTCAGATATAAAGCATCCCTCGATGTCCACATTAGAGTTCACACAGGGGAAAACCCTCATACCTGCCGACTCTGCGGGAAGAGCTTCACACAGAAGGGCTCTCTTAAGGCACACATGAtcattcacactggagagaagccgttcacATGTGTTCAGTGCGGAAAGAGCTTTAGACGAAAACTAACCTTGAACGAACACGTGAAGATTCACATTGAGAGTGAACTATTAGATCAATGTAATGCAGCTACATCAACGTGTAAAGATTCACTAACATGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000161685

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019098 lncRNA downstream 40329 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 72378 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 78474 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 237207 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019099 lncRNA upstream 40505 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 128185 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 133280 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 152104 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 185050 869961 ~ 909037 (-) True XLOC_008896
TCONS_00017558 mRNA downstream 4261 665156 ~ 669476 (-) False XLOC_008887
TCONS_00017559 mRNA downstream 4261 666200 ~ 669476 (-) True XLOC_008887
TCONS_00017556 mRNA downstream 13343 649737 ~ 660394 (-) False XLOC_008886
TCONS_00017557 mRNA downstream 13448 656069 ~ 660289 (-) True XLOC_008886
TCONS_00017555 mRNA downstream 22135 647854 ~ 651602 (-) False XLOC_008886
TCONS_00017563 mRNA upstream 96 685007 ~ 704465 (-) False XLOC_008889
TCONS_00017564 mRNA upstream 9742 694653 ~ 695164 (-) False XLOC_008889
TCONS_00017565 mRNA upstream 14831 699742 ~ 704419 (-) False XLOC_008889
TCONS_00017566 mRNA upstream 15486 700397 ~ 704408 (-) True XLOC_008889
TCONS_00017567 mRNA upstream 37564 722475 ~ 734203 (-) False XLOC_008890
TCONS_00017537 other downstream 247981 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 324170 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 636879 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1150060 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1581058 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1940117 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2051472 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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