RNA id: TCONS_00017564


Basic Information

Item Value
RNA id TCONS_00017564
length 186
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_008889
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 685007 ~ 704465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCACCAGGCTGCGTCGCTCTATCGGCTGTGAATCCAATCGtgaaagAGCAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaaactttcagagtcaaacatgaagatcctgaggaacaaacag

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019098 lncRNA downstream 61245 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 93294 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 99390 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 258123 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019099 lncRNA upstream 30252 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 117932 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 123027 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 141851 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 174797 869961 ~ 909037 (-) True XLOC_008896
TCONS_00017561 mRNA downstream 9742 673737 ~ 684911 (-) False XLOC_008888
TCONS_00017560 mRNA downstream 15175 672984 ~ 679478 (-) False XLOC_008888
TCONS_00017562 mRNA downstream 15175 674376 ~ 679478 (-) True XLOC_008888
TCONS_00017558 mRNA downstream 25177 665156 ~ 669476 (-) False XLOC_008887
TCONS_00017559 mRNA downstream 25177 666200 ~ 669476 (-) True XLOC_008887
TCONS_00017565 mRNA upstream 4578 699742 ~ 704419 (-) False XLOC_008889
TCONS_00017566 mRNA upstream 5233 700397 ~ 704408 (-) True XLOC_008889
TCONS_00017567 mRNA upstream 27311 722475 ~ 734203 (-) False XLOC_008890
TCONS_00017568 mRNA upstream 27311 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017569 mRNA upstream 27311 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017537 other downstream 268897 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 345086 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 626626 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1139807 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1570805 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1929864 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2041219 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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