RNA id: TCONS_00017566


Basic Information

Item Value
RNA id TCONS_00017566
length 782
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_008889
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 685007 ~ 704465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcggcgccgcgCTCCGGTTTGTTGTGAATCTACTCGAGAAAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagAGCTGATGCCACTCAAAGATGAGAGTCAAGAACAGAATGAGACGGAAGAGACTGTTCAAGATGAGGGATGTCTTGATCTCAGATCTGGAGAAGCATCAGAACAGACGGAAACCTCGCAAAAAACAGCCGAATCGAACACCTGCCATCactgtggaaagagcttcactcGGAAACAGTACCTTACaaaccacatgaggattcacaatGGAGAAAGGCCTTTCAAATGCCACCAGTGTGTAAAGATATTCACACAGAAGCAAAACTTTCTTgaccacatgaggattcacaccggagaaaaGCCGTACACCTGCcaacagtgtgggaagagtttcacttGGAAACGGTACCTCATAACACACACGAGGATGCACACCGGAGAAAAGCCGTACACTTGCCAAGAGTGTGGGAAGTGTTTTGCTCGGAAACATATGCTTACAATCCACATGAGGGTTCACACTGGAGAACGGCCTTACCCTTGCCAAGAGTGTGGAAAGGGTTTCACTCAGAAACATATCCTTATAGAccatatgaggattcacactggagaaaggcCTCACgtttgccaacagtgtggaatGAGTTTCACATGGAAACAATACTACACCGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1529 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDART00000156200

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019098 lncRNA downstream 66989 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 99038 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 105134 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 263867 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019099 lncRNA upstream 21008 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 108688 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 113783 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 132607 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 165553 869961 ~ 909037 (-) True XLOC_008896
TCONS_00017564 mRNA downstream 5233 694653 ~ 695164 (-) False XLOC_008889
TCONS_00017561 mRNA downstream 15486 673737 ~ 684911 (-) False XLOC_008888
TCONS_00017560 mRNA downstream 20919 672984 ~ 679478 (-) False XLOC_008888
TCONS_00017562 mRNA downstream 20919 674376 ~ 679478 (-) True XLOC_008888
TCONS_00017559 mRNA downstream 30921 666200 ~ 669476 (-) True XLOC_008887
TCONS_00017567 mRNA upstream 18067 722475 ~ 734203 (-) False XLOC_008890
TCONS_00017568 mRNA upstream 18067 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017569 mRNA upstream 18067 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017570 mRNA upstream 18067 722475 ~ 915635 (-) False XLOC_008890
TCONS_00017571 mRNA upstream 18067 722475 ~ 931848 (-) False XLOC_008890
TCONS_00017537 other downstream 274641 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 350830 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 617382 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1130563 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1561561 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1920620 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2031975 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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