RNA id: TCONS_00017571


Basic Information

Item Value
RNA id TCONS_00017571
length 3082
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_008890
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 722475 ~ 1003553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTATTTAAATGCGGGCGGGAGAGTGATGTCATAACTCTGCGCCGTGCTCTTGGGTATGTTGTGATTCTGCAGGAGAAAGTGTCTAAAAACACAAACTCCTGAAGCGACTGAggtataaagatggcgtttattaaagtgGAGAGTGAAGATATGatgattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagGACAAACACAGAAgatctgctgaagcgactgagctcagactgttataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacaggaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagAAGATCTTATGCCACTCAAAAAGGAGAGTCAAGACCAGAATGAGATTGAAGAGGAGGATCAACATGAGAAAATATCTGAAGAAGAACCAGAACAGACAAAAACCTCCTCAGACAGAACAGCACAGATGACCGAATCTAACACCTGCcatgagtgtggaaagagtttcactagGAAACAATCCTTTACaaaccacatgagaattcacactggagaaaagccttacgcttgccaacagtgtggaaagagtttcacttcTAGACAATATCATAAAAACCACATGAaggttcacactggagaaaagccctaCACCTGCCAACACTGTGGAAAAAGTTTCACTCGTAAAGAATCCTTTACaaaccacatgagaattcacGCTGGAGAAAAGCCTTACACCTGCCTGTACTGTGAAAAGAGCTTCACTTGTAAACTAAACCTTAAAAACCACATGATCGTACACACTGGAGCAAAACCTCACACATgccatcagtgtggaaagagtttcacttgGAAACAATACCTTGCCGagcacatgaggattcacactggagaaaagcctcaCAGTTGtcaacaatgtggaaaaagtttcACTTGGAAACAATCCTATAAAAGTCATATGAGAAATCACACTAAAGAAAGGCCTTACGTTTGCcaacagtgtgggaagagtttcacttggaaacaaaaccttaaaaaacacatgaatgttcacactggagaaaagctgTACAGCTGTCAAtactgtggaaagagtttcacttgGAAGCAAAGCCTTACAGACCATTTGAAGATCCACTCTGGAGTAAAGCCGCACagttgccctcagtgtggaaagagcttcacttGGAAACAAAACCTTATTGAGCATATGAAGGTTCACAGTCGAGAGTCTGCTAAGGGGACAGAGTTTCAGATATAAACCACTTTTTGATTCCCACGTGATGCTTCATAATAGACAAAAGCCTGAAATTGGAAGGAGAAAGTAAATCAGTGATTAGTGTTGAGTTTCATATACAGGAATCATGTAGTAACTCACACCAGAGGAAAGTCCTAAAATCGTTCACATGTGAGCCCCAAACCCAGGCCTGGCTCCAGGGTGATTGTCCCGTTTGAGCCATATTGGTCCTCAATTTTGTTGTACTCATAAGAGGGGTTTGAACCACACTTAGACCTGTTAACTAGGACCACTTTGGCTTGGGAGACAATAGCAGAGGCGTTTAATCCCAGACAACACCGCTTCTAACATCATTCAGGCACTAAAACCCCTACAACACGATAAGGTGCCATTTCAAGGAGAGGTAGCGCTGAATTAATCTACTGATCTAGAGTTTTCTGTCAGAAAAAAGAGACGGGCATACATGGAGAAACTGCCACCTGTAGAAAACTCTCAGTAGACAATTCCAGAAACATTTGTAATGTGTTATGCAGCTTCATGAAGACATTGTGCATCATAGACGTCACATGATTATTGATTGTgtgggctcaggactactgcgACAAACTTTTGTCAAATCCACAGTTTGTAGTTACATCTACACATGCCATTGAAAACTGTACCGTGCCAAAAgcaagccctatgttaacagtgatTAAAAGCACCGTCGACTTCTCTGAGTTTTGGCCTCTGTCACTTGTGTGATATATCGTTTattcaacagtttgacggcataattgtgtattcaaaaaaagaaaataaaactagAGTCTataaacccttttgtatgaggaactattttcttcgcctgttcattcacatctgcagctgaggtcagaacagcagaaaacagcagaaagtgtttgaatgattctctagcgtaatgtctagaGTAATGAATAATCAGCTGATCTGGCTCACATTATAAGATTAtagggctgaacagcatgaaatgccatcagtctacagatttcccagcatttctctgttgtaatcggagtgtcacaataattaaccccgaaaaagccaaagcaaacactagcagattactgttgtgCTTGCGATAAGGAAAAGTGCTAAACACATGCGTGCGTTTCTTCTGTCTGTTTACTGAACTATTCTGCAGTAACGAAACCCTTcctcttacccctacccctcgttttgcacatTCACGTCAAGGaataggggtgtcccaattctctttagcttgaaagcGTAGGGCTAAGGGTAAAAGGTAAATACCACTCTgtatgaagatttttcaggaccacactcgaaaccaagtggtaagaaaatttcccagaatacaccagccacaatgaCAGAATCTCTGCACCCGGATGTAAGGAGAtcccaatattattattttttggtcatTAATACAAATtcttacaacaaacaagcacatgttttaatatattcattaccATGATCTTGTTTTACCTTCATGCTtgaaaataaatgctaaaataaaaacctctaaatttgccgatctataatccctaacaATACCTTGAGTGACAGTCGAATACAGTGTTGCCAGGTGTAtgataattatcatatttgtaCGATAATTTCGAAATCTGTACGATGTACGATCAATAATGAGAAAAATCCTATAATGTAcgataatttcagaattttatggcatttaaaagtaatttcattGTAATCTTCGGGCTTCTTTCTTTATTGATCTAGCTGCATCTTTTCTGTACTGTCTGTGAGGAGTAGGTGGAGTTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5253 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000184754

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019098 lncRNA downstream 89067 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 121116 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 127212 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 285945 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019107 lncRNA upstream 54296 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019108 lncRNA upstream 54296 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019109 lncRNA upstream 54296 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019110 lncRNA upstream 75752 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019111 lncRNA upstream 208597 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017563 mRNA downstream 18010 685007 ~ 704465 (-) False XLOC_008889
TCONS_00017565 mRNA downstream 18056 699742 ~ 704419 (-) False XLOC_008889
TCONS_00017566 mRNA downstream 18067 700397 ~ 704408 (-) True XLOC_008889
TCONS_00017564 mRNA downstream 27311 694653 ~ 695164 (-) False XLOC_008889
TCONS_00017561 mRNA downstream 37564 673737 ~ 684911 (-) False XLOC_008888
TCONS_00017586 mRNA upstream 10683 942531 ~ 952891 (-) False XLOC_008901
TCONS_00017587 mRNA upstream 10775 942623 ~ 945804 (-) False XLOC_008901
TCONS_00017588 mRNA upstream 14871 946719 ~ 951118 (-) True XLOC_008901
TCONS_00017589 mRNA upstream 66991 998839 ~ 1003553 (-) True XLOC_008890
TCONS_00017590 mRNA upstream 85589 1017437 ~ 1022436 (-) True XLOC_008904
TCONS_00017537 other downstream 296719 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 372908 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 389942 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 903123 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1334121 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1693180 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1804535 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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