G161988


Basic Information

Item Value
gene id G161988
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8463777 ~ 8466284 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU183925
TGAAAAGCATGTTTATTTTGATCGCTGTAAACAAACAAACAAACAAAAAATACACAGTATATTCAAGAAATGTGCAACACAAAATGCACAAAACTGAGAAATTAAGCATTGCAGAGTATTTACATTTACAATTTAAATTTAATTACATTTATTCCACTTTATTTGTAATTTACATTTGTGATGTACAACTGTTTCATACTAAGAAAGTCAATGGGATCCAAAACTACTTTGACCCCCTTTGACTTTAATTGTTCTTAGAAAGAAAGTCATACAAGTTTATAACGGTTAATTTTTTGGTGAACTGTACCTGTAAGAGAATGGAAAAAAAAAATGCCTGTGTTGTGTGACTGACATTTCCTCCATCTCTCACTTACAAAAACCACATCCTTTGAAACTCTTGTGAAGTCATGTCACAAAAAACCATAAACCTATCACATTCTCAAAAAAATGTTGTCTTTATAAAAACATATACAACAATACATTATACCTTTATTTTTTTACTAAAACCATTTAAGCTAACATTAAACAAAATGAAAACAATAAGTAAAATACATAAATAGTCAATTTCATATTGTAGAAGAAAGAACATTGGTTTTTCATGCATTTGACATTAAAATATTGAAATAATAAATAATATAAACCATTTCATATTAATAACAGGTTAGGTTATATAATAATGCCTTGGGAAATATGTTTTAATATATTTTAAGTAAGACAAAACAAGCAACAAAATAAACTAAAAACTTTAGGTCAAATACTGAATAGACACCATGAGAATTGATAAACATAAATGGAAACAGCATGAGGTCAATCCATGCTACAAATGCTGAGTTCAGAGTGAAGAGAGTCCTCCTCTGCTGTCTCTAAAAATGTGCAAAAACATGTTTATCAGTCAGTTATTGCACAAGGTCAACCCTTCAGCTCTATGAAAACGGTTATGCAAATAACTTTTAAGATCCAAGTGAAAGTTTCATTTCTCAGGCTGCTAACAATTTAAAAGTCTATTATGCAAAAGCAGTTATGCAAAGTTTGTGCAAAACAACCATGAAAAACAACAACAACAAAAAAAATTCCATTCATTTATGTCATAAAATCTAAATGTACAATCTAAACTTATTCCAACTGCAATTTCTCTTCGAGACATACGTACAGATAAAAATTCATAAATGAACTGATGAAAATGTGCATCACAATTAATTATATTTTAATGACTAATAGATGGTGCACAAATTGTATTCAAAAATTGCATTCAAATCACATCAAAAATTGAAACACCAGGTTTTTTGTTTGATATTTAGCTACTGAAAGCTTTTAAAGACTCGCATGTTTACAGGCTCACATCGACCTACAAGACCAAAACAGCCCTTATGGAAACTACCATGATTTTAATTAAGTAACCACATAATTCCACCATACCTGCAGTAAAACGATGTACAGTATATGTTGATATACACAGTAACTAAACTTTTACCATGACATTTGTTGTAAAAGCATGACAATAACAATGTTAATGAATTTTGTGAATATTTTATTTATAATAACAAAGGCAATGAGGTTGTCACGAGTGCACCGGTCCTCTTTCACTGCTACGCTACCTCACTCACACTCTGGACTACAATTCCCAGCATCCCTCCTGGTTCTCACCTGCACTCATTCAGCCATCATCCACATCTGCATTTGATCTTCACCTCATCCAGACACACATATAAGCACACACTTCGCCTATCCTCACTGCCTGGTCTCAAGGCTCAAACGGTTTTTCCAGCTTTTTTTTTTCTCCCTCCTGTGTGCTACTCCTTCATGTTTCCAGCTAGGGATTGAGAAATGAAGCCTCTTAAAGCTCATCTCTAGTTGTTTCTGGAAAAATGTTCCATTTTCTGATAATAAAATTCACATATTAACGTGCTGCAAATAATTCAATGTAATAATAATAAGTAAATGGTGATCTAATTATTTTATATTCTTTATACTGCTTATATGGCAGAATATATGGTCATATAATATATGTTAGTAAATGGACTTGAACTTCCATAAACCTGTAAAATAGTGATCTGGGTTCCCAAACATCCAGACAGTGAAGCATTCACGTGACTGGAAATAAAGAGAAGCTACGTTTTTCGTTGATCACGTGTTTCTCTGAAAACAATACACACTTTGAAGCTTTAGTGTCACATAATCTCCAGCGTCTCCAGTTCGTCTACCTGTGTGTATTATAAGATTACCTTACAGCTATCAAGTCGAGGTGTGTGTATCCTCATGTCATGTCATCTCTTCTCATTCACGATCTCCACCATCAAACGGCAAAAACTGTAAACTCTATTACGATCCTGTTATCTTCACAAACTACTTTATTATTTAGGCTAACCGTTTTTTACCATCTGCTGCAATAATGTAGATCCTCATTTCCACTAACTATCGGTCTGAGTCTGATATCTCGTAACAGTAGTTTATAGTCATATAATTTATAATGTCAACAGAATATAAGCGTTAGTTACTCACCCACTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183925 True 2508 lncRNA 0.33 1 8463777 8466284

Neighbor

gene id symbol gene type direction distance location
CI01000030_08168074_08174577 NA coding upstream 289115 8167927 ~ 8174662 (+)
CI01000030_08159242_08166884 GLS2B coding upstream 296832 8159242 ~ 8166945 (+)
CI01000030_08155452_08158318 RDH5 coding upstream 305068 8155452 ~ 8158709 (+)
CI01000030_08150901_08154024 GM7936 coding upstream 309753 8150901 ~ 8154024 (+)
CI01000030_08133065_08140755 RBCK1 coding upstream 322779 8133065 ~ 8140998 (+)
CI01000030_08555726_08559327 MMYHEMB1 coding downstream 89095 8555379 ~ 8559397 (+)
CI01000030_08763819_08775586 NA coding downstream 297446 8763730 ~ 8775772 (+)
CI01000030_08837486_08838040 NA coding downstream 370937 8837221 ~ 8838451 (+)
CI01000030_08845484_08861801 NA coding downstream 379200 8845484 ~ 8861801 (+)
CI01000030_08862264_08875155 NA coding downstream 395980 8862264 ~ 8875155 (+)
G162117 NA non-coding upstream 12150 8450792 ~ 8451627 (+)
G162116 NA non-coding upstream 13107 8449923 ~ 8450670 (+)
G162019 NA non-coding upstream 23037 8437635 ~ 8440740 (+)
G161984 NA non-coding upstream 64142 8396642 ~ 8399635 (+)
G161983 NA non-coding upstream 69234 8391987 ~ 8394543 (+)
G162009 NA non-coding downstream 3582 8469866 ~ 8478940 (+)
G162016 NA non-coding downstream 11483 8477767 ~ 8529751 (+)
G162138 NA non-coding downstream 96833 8563117 ~ 8564920 (+)
G162142 NA non-coding downstream 128534 8594818 ~ 8596250 (+)
G162088 NA other upstream 224173 8237965 ~ 8239604 (+)
CI01000030_07868597_07886123 NA other upstream 591005 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 1261292 7200104 ~ 7202485 (+)
G159816 NA other upstream 3946670 4516778 ~ 4517381 (+)
G159685 NA other upstream 3975251 4431800 ~ 4488526 (+)
G161986 NA other downstream 78298 8544582 ~ 8548325 (+)
G162137 NA other downstream 101726 8568010 ~ 8571726 (+)
G162449 NA other downstream 890119 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1576509 10039358 ~ 10047210 (+)
G162297 NA other downstream 1667015 10133299 ~ 10221224 (+)

Expression


Co-expression Network