CI01000033_01086310_01093184 (NDEL1B)


Basic Information

Item Value
gene id CI01000033_01086310_01093184
gene name NDEL1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 1085799 ~ 1093184 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_01086310_01093184.mRNA
TTATCATGACGCTCAGGAGGAGCTGCAGGAGTTCCAGGAAGGCAGTCGGGAGCTGGAGGCCGAGCTGGAAGCTCAGCTGGGTCAGGCTGAACACCGCATCCGAGACCTGCAGTCAGAGAACCAGCGGCTGAAGAGCGAGGTGGACACGCTCAAGAAAGCACGATCATTAACTGATCACATTCTCCAAAACACAGTACTAGCCTTTGCATACTATCCTTGCATTCATTTTGGAAAATATGGGACACTCACTATTTTGCCATGGCCCAAAACAATACACTTATTTAGACTAAATGGAGTGGATAAAGAGAAACTGGAGCAGCAGTACGCACAGAGCTATAAGCAGATCTCCATGCTGGAGGACGACCTGGTCCAGACGCGCGGCATCAAGGAGCAGCTGCACAAATATGTCAGGGAGCTGGAGCAGGCCAACGACGACCTGGAGAGAGCCAAGAGGGCCACCATCACATCTCTGGAGGACTTTGAACAGAGGCTAAACCAGGCGATAGAGCGGAACGCCTTCCTGGAGAGCGAACTGGACGAGAAGGAGTCTCTGCTGGTCTCAGTGCAGAGGCTGAAGGATGAAGCTAGAGACTTGCGGCAAGAGTTGGCTGTACGAGAGAGGACTTCAGATGTTGCCAGGATGTCGGCCCCCAGCTCTCCCACCCTAGACATTGATAAGACCGACTCTGCTGTACAGGCCTCCCTGTCCCTCCCAGCCACACCTGTAGGGAAAAACATGGACCATCCTTTCATTGTTTCCAAAGCATTGACCAATGGCTGCGGAAACTCCCCCCTAACACCATCTGCACGCATCTCAGCCCTTAACATCGTTGGTGACCTTCTGCGGAAAGTCGGGGCTCTTGAGTCTAAACTAGCTGCCTGTAGGAACTTTGCCAAGGACCAGGCAGCAAGGAAAAGTTACGCCACAGGAAACGGAAACCTCATCAACAGCAATGCAACCAAGTTCTCTCATTCACTCCACACTACGTATTTTGATAAGACGACTATGAATGGACTGGACCCCGGTGCCCTCACTGCCATGGCTTCCCCACGAACCGTGTCTCCTCCCGGCATGCTCCCTCTCAGCGTGTGACAGACGGTCCCAGAAGCTCGACCTCCACACAAGCTCGGACACATTGCGGAAATGGAGAGGACACTCGAAAGAATGTGTGAGTGTGTGCGTGAGAGAGACTGAGATGTCGTGCCTCAAGCCTGTCTGACAGATACATGTCAGGCGTGAGGGGCCGTTACTGTGAGCGTCCCGCGTGGTTCTGTTGACCTCTGTTCTCATGAGGTTTCACTTAAAGCCAGCAAAACGACAAAGGTCTGGGTCGGACCACAGCTTCTGTGTGAGTGTTTTTAGTGTGTCGCACAATTTAAAAGAGGTTTAGCAAATGTAAAAATTATTAAAAAGAATGAAAAGGGATTTTCTTTTGAGGTGAACGTCACTGTATGCGTAACGCAAATTAGTGTTTGTTGTATGAGTGTTTGGGGCATGTGTCGATCTGAACATCCCCTCAGCTTTGATTTACATGTTCAGGAAAGGGTCTTTATGTGGAGGTCAGCAGATGTTTTTTTTGTTTTGTTTTTTTTACTGGAATAAA

Function

symbol description
ndel1b Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in brain; hindbrain neural plate; notochord; somite; and trunk. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16739 NDEL1; nuclear distribution protein NudE-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_01086310_01093184.mRNA True 1604 mRNA 0.50 8 1085799 1093184

Neighbor

gene id symbol gene type direction distance location
CI01000033_01065312_01066129 NA coding downstream 19670 1064185 ~ 1066371 (-)
CI01000033_00774703_00795792 NA coding downstream 286763 774508 ~ 808351 (-)
CI01000033_00662958_00699643 ADGRL1 coding downstream 386156 662958 ~ 699643 (-)
CI01000033_00509701_00513969 NA coding downstream 571518 509393 ~ 514281 (-)
CI01000033_00482628_00490027 TMED1A coding downstream 595772 482265 ~ 490027 (-)
CI01000033_01119076_01152170 ARHGAP44 coding upstream 25745 1118929 ~ 1152170 (-)
CI01000033_01244910_01251102 NA coding upstream 151451 1244635 ~ 1251102 (-)
CI01000033_01255331_01259169 GIPC1 coding upstream 161786 1254970 ~ 1259179 (-)
CI01000033_01274093_01274303 NA coding upstream 180909 1274093 ~ 1274438 (-)
CI01000033_01296158_01307173 SAMD1A coding upstream 202974 1296158 ~ 1307173 (-)
G168688 NA non-coding downstream 243196 842338 ~ 842603 (-)
G168283 NA non-coding downstream 252636 832939 ~ 833163 (-)
G168280 NA non-coding downstream 255806 829776 ~ 829993 (-)
G168271 NA non-coding downstream 261129 824346 ~ 824670 (-)
G168834 NA non-coding upstream 95827 1189011 ~ 1189247 (-)
G168840 NA non-coding upstream 104315 1197499 ~ 1197794 (-)
G168843 NA non-coding upstream 107156 1200340 ~ 1200585 (-)
G168237 NA other downstream 314208 757371 ~ 771591 (-)
G168847 NA other upstream 132404 1225588 ~ 1229549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location