CI01000033_00482628_00490027 (TMED1A)


Basic Information

Item Value
gene id CI01000033_00482628_00490027
gene name TMED1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 482265 ~ 490027 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_00482628_00490027.mRNA
ATGGAGCGTTTTAAAGAGACGCGTCTCGTAGTGTGTTTGCTGCTCTTTCTGACGCTCTGCGTGGATTTGGGATTCGAATTCGGACGGAATAAGGACTCCGAGTTCACTTTCCTTCTACCTGCAGGAGCAACCGAGTGCTTCTTCCAAACAACCTCTAAGAACGGCAGCATAGAAGTGGAGTACCAGGTGATTGCAGGCTCAGGGCTGGACGTGGGCTTCACTCTGATCTCCCCCCGTGGATACAGACTAGTCTCCGACTTCAGAAAATCGGACGGCATCCACACGGTGGACCCCACTGAGGAGGGCGACTACAGGATATGCTTTGATAACAGCTTCAGCCGTGTTTCAGAGAAGATGGTGTACATGGAGGTGATCGTGGATGGACCAGAGGAGGAGACTGAGGATGAGGAAGACTGGGCTGCTCTGGCTGAACCCGAGGACTCGCTGGAGTACAAACTAGAGGATATCAGGGACACAATGGATGCTGTGCACAAGAATCTGGAGCGAAGCCGTCAGCTGCAGACGACACTGCGGGCATTCGAGGCTCGTGACCGTTACCTGCTGGAGGATAACCTGTGGCGGGTTTCCTTCTGGTCCAGCGTCAGTTTGCTGGTCATGGTCAGCGTAGCCCTCACACAGGTCTACACGGTACGCAGATTATTCAGTGATAAACACAGAGTCTGCACATAGCAGAGATGAACTGGGGGAAGATGCTGTAACACTCTATGCACTCATTGTTAACGTAAAATACAAACTAGTGGAAGTGAGGAAACTCTCAGGTATCAAAAAAAAAAAAAAAACCCTCTAGTTTAAGAGATATCAATGAATCTGAAATCTTGGAGCTTGACTCAGTTTTAATTGTAAGAGTTTTCTTTAGAGCACTAACTAACACTGGTAAACACTAAATTTACTTGAAGTTCTGTAGCAACATTTGAATGTGAATGTAATTTTGTACTTGAATGTGGTTAAAATAATTTATGAGACTTTTGAAATGAATAACATTGCAGTAAATTGTAACATATTTCTTATGGATTTATATGGCAGTAAAATAAA

Function

symbol description
tmed1a Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in myotome and yolk syncytial layer. Orthologous to human TMED1 (transmembrane p24 trafficking protein 1).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K20348 TMED1; p24 family protein gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_00482628_00490027.mRNA True 1053 mRNA 0.45 4 482265 490027

Neighbor

gene id symbol gene type direction distance location
CI01000033_00415100_00423953 QTRT1.S, QTRT1 coding downstream 58312 414952 ~ 423953 (-)
CI01000033_00326195_00369841 NA coding downstream 112424 326137 ~ 369841 (-)
CI01000033_00313235_00315162 NA coding downstream 167077 313060 ~ 315188 (-)
CI01000033_00306473_00307958 NA coding downstream 174307 306333 ~ 307958 (-)
CI01000033_00295796_00298229 NA coding downstream 184033 295679 ~ 298232 (-)
CI01000033_00509701_00513969 NA coding upstream 19366 509393 ~ 514281 (-)
CI01000033_00662958_00699643 ADGRL1 coding upstream 172931 662958 ~ 699643 (-)
CI01000033_00774703_00795792 NA coding upstream 284481 774508 ~ 808351 (-)
CI01000033_01065312_01066129 NA coding upstream 574158 1064185 ~ 1066371 (-)
CI01000033_01086310_01093184 NDEL1B coding upstream 595772 1085799 ~ 1093184 (-)
G168178 NA non-coding downstream 3800 477110 ~ 478465 (-)
G168168 NA non-coding downstream 161775 320147 ~ 320490 (-)
G168167 NA non-coding downstream 169534 312418 ~ 312731 (-)
G168164 NA non-coding downstream 176849 305142 ~ 305416 (-)
G168163 NA non-coding downstream 177313 304678 ~ 304952 (-)
G168182 NA non-coding upstream 8983 499010 ~ 500751 (-)
G168206 NA non-coding upstream 28003 518030 ~ 518283 (-)
G168213 NA non-coding upstream 38638 528665 ~ 529528 (-)
G168230 NA non-coding upstream 72924 562951 ~ 563245 (-)
G168241 NA non-coding upstream 96548 586575 ~ 586842 (-)
G168237 NA other upstream 267344 757371 ~ 771591 (-)
G168847 NA other upstream 735561 1225588 ~ 1229549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026733 tmed1a coding NC_007114.7 CM002887.2 47222096 ~ 47235997 (-)