G168182


Basic Information

Item Value
gene id G168182
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 499010 ~ 500751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU191050
GAGGTTTGTCATAACTTTATTTCGAGTAGAAAATGCATTCATAATAAACAAACATTCATTTAACATACTTGACAAAGTTTATATCTCCTAATATGAGATATAAAGGGGTCCAAAAGTTTGAAATGATTAGGGAAAATGCTTTTATTTTGCAATGAAATATTTCTGTGGGAGTCAATGTTGCTGTATCAGGATGCTCAAACAAACAGAGCAAGTGTTTACTACAAATGATTATTACAAAATTACACACTTTAAAGTTGATTCAGGGTCAAACTCCTGCGAGGACTTCAGAAGACGCAACATGCACATTCCCAAATTTCTATATATCCTAATTATTGTTAATATGTAATTCATTTTCCAGGAGCTCATTGCTTCTACCTTCAATTAAATTGCTAACAGTGATTGTAAATTAATTGCCTAAATTATTACATTATTTTCTAACTGCATACTTTAAATTGTAATGCTGACATGCATTCTATGTAAAGCTGCTTTGAAACGATATGTATTGTGAAAAGTGCTATACAAATAAATGTGAATTGAAAAAGTCGGCATGAAATGGAAATTCACCCTATCAATGCATGTTGTAAATGTTATTGTGAACGATTCATGTATGTTACATTTGTCTATTTTGTTTTTTGACCTTGTTTAATCAAAGTGTTGTAACTCGATCTTGGCGATCTTTGGCGATTTGGTAGCTAATTCATGTGAGTTCATATGATCCATTTCATATGTTTTTCGTACAATCTGCTTGCGGTTTTGTTTAGAGGTAGACTTAGGAAAGTTAAATTGAAGTTAGCGCTTTTTGGACGTACGTCGAATGCGTATGGCTGTCGCGCCGGAAGCTTGTTATTTTACTTTATAAAGTTTTAAATAAGGATATTTGTCTTACAAAAACGCATCGATTCACTTCAGAAGGCCTTTATTAACCCCCTGGATTTGTACGGATTCATTTTTTCATGGATGGATGCAGTTTTCTTGTCTTCAAAATTTGGCCACCCATTCACAACATTATAAACATTGGAGGACTAAAGATATTTTTAAATATATCTACGATTGTGTTCGTCTGAAAGAAGACAGTCATATACACCTAGGATGGCTTGAGAGTGAGTAAATCATGTTATAATTTTCATTTTTGGGTGAACTATCCCTTTAAGGGAGGACCTTCATGCTTTTTTCTGAAAATTGTACAATTGTAAAATTGTACCATGTAAAATAGTTACATTTTCCTGTGCTATGCAGAACTTCTCCAATCATTTAGACCACTTAGGGTACGTTTACACAACAGCGATGTGCTAAAAACTGAAAAGTTTTTCCTTTGCATTTTTCACGGACAGACAACTCCATTGTCTAAACAATCTTCGTTCACACGGATCCGTGAAAACAATTAAAAACATTGTACTGTACTATGCATTCCATGCCAGTAGTTGGCGATCTCACTCTGTAAAGAAACACTACGACTGAGCATGCAATACACATGGGCTTGACGTCACTGTTTTACAAATTCGCGTTTTTGTAGTTTACACAGAGACGATAACGGTACCGTTTTCAAAAACTTGCATTTTGAAACACGTTTTCAAAAGTTTGCATTTTCAGGATGCCAAAACGCTGCTGTCGTGTAAATGGATAGCCCAAATGCCAAAACCCCCGCCCTATTTTTATCTTTTTCGATAATAAAGATAAAGATCTTCCATTTCATTTTGATTTGAAAGTTAAAAAAAACAAACATTTTCAACGTGGTCTTAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU191050 True 1742 lncRNA 0.34 1 499010 500751

Neighbor

gene id symbol gene type direction distance location
CI01000033_00482628_00490027 TMED1A coding downstream 8983 482265 ~ 490027 (-)
CI01000033_00415100_00423953 QTRT1.S, QTRT1 coding downstream 75057 414952 ~ 423953 (-)
CI01000033_00326195_00369841 NA coding downstream 129169 326137 ~ 369841 (-)
CI01000033_00313235_00315162 NA coding downstream 183822 313060 ~ 315188 (-)
CI01000033_00306473_00307958 NA coding downstream 191052 306333 ~ 307958 (-)
CI01000033_00509701_00513969 NA coding upstream 8642 509393 ~ 514281 (-)
CI01000033_00662958_00699643 ADGRL1 coding upstream 162207 662958 ~ 699643 (-)
CI01000033_00774703_00795792 NA coding upstream 273757 774508 ~ 808351 (-)
CI01000033_01065312_01066129 NA coding upstream 563434 1064185 ~ 1066371 (-)
CI01000033_01086310_01093184 NDEL1B coding upstream 585048 1085799 ~ 1093184 (-)
G168178 NA non-coding downstream 20545 477110 ~ 478465 (-)
G168168 NA non-coding downstream 178520 320147 ~ 320490 (-)
G168167 NA non-coding downstream 186279 312418 ~ 312731 (-)
G168164 NA non-coding downstream 193594 305142 ~ 305416 (-)
G168163 NA non-coding downstream 194058 304678 ~ 304952 (-)
G168206 NA non-coding upstream 17279 518030 ~ 518283 (-)
G168213 NA non-coding upstream 27914 528665 ~ 529528 (-)
G168230 NA non-coding upstream 62200 562951 ~ 563245 (-)
G168241 NA non-coding upstream 85824 586575 ~ 586842 (-)
G168245 NA non-coding upstream 103694 604445 ~ 604791 (-)
G168237 NA other upstream 256620 757371 ~ 771591 (-)
G168847 NA other upstream 724837 1225588 ~ 1229549 (-)

Expression


Co-expression Network