CI01000034_03255619_03266388


Basic Information

Item Value
gene id CI01000034_03255619_03266388
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3255268 ~ 3267690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_03255619_03266388.mRNA
ATGGTTGTCTTTTCACTTTACCTGTAGTTTATTCCAGACTATATATGGAAGCTTGTTTGTGCCACAGAATAAAAACAAAAAAGTTTTTTTTCTTTTTTTTTCTCAGAACTGTGAGAACATCAATAATCAGAATTCTGGTACAAGGAAATTGTGACGCTTGGAAAAAATCTAATGCCCCATCATATGAATACAATACATTCAGTGACATGACATCAACCCCCAGGGCTTGAGGGAACGCTTTCTTTGAAAACATGTTTGTTGAAATAAAACTGGTAAAACTAGATCACTGAGCAAGACAAACAGTCATCTTCATTAACATTTTTATAAATTTAAATGCCACTCAGAAACAGAAATAGTGATAACAATACTTATTTTACAAAACATTGATGGAGGTAAGTCTCTCTCTCTCTCTCTCTCTAAATATATATATATATATATGTGTGTGTGTGACACACAGTGACCTCACATTTTTAGACAGAAGATTTAAATTTTTATTTTTTACATATTTAGTAGGCTACTCTTCATGACTCAGCTGTTCTTCTTTCATATATTATCTTTGCCCTAATGAACTCACCAGCAAAACTTTTATCTTTGAAACACATAAGCTAAATATGTTCTTTATGCATGAATATAGGGCCTACATTACTGTTTCTAAAGTCTGGGGTCAGTAAGATTGTTTGTTTTACTACTAAACACAGCTCCCACAAAACTCGCTCCTCCACTGTGAATAAATCGCCATCCGAATGCATATTGCAAATTTATTTTTACAGACGTCTATATGAGAAACAATTACCATCCGAATATCACTGGATAACTTTATTGTTTATGTAGGCTAATGTTTTTAATAAGAGACAGGCAGACAGGGAGGTTTGAGAGCAAAAAGATCACCAAGTAATGAAAATGGAAGACTTTTGTGTATTTTTAACATATTTTAGATATACAATGTAGCATGCTCATTCAATATACTTTTTTTTTTGGTCCTAAATTGCAAGCGTCAACATTGAGATGAACACATTACACCATTTCAGACACCTGAAATGGTGTCTGAAATTGTGTCGCTTGGTATAAAGCGACTGAATTGAAATCAATAAGTAATCCTTAAAAATCAATAAGTCATCCTTAAAAATACCTAGGTGACCGGGGTGTGTACTGTACTGACAGAACAAAGGCTTCCAATGAGTCAGAGTCTCTTGGTGGTGGGGGCTGAGAACTCTTGATAAACACGACAGTACCTGCTTTGCATCTCATTAGAGAGCTGAGAGTAGAGGTAACAGCAGTCAGAACACAGACCAGAGCATAAGTATGAAGTTTAACACAGCTTTGAGTGTTGTTGGAACCTTACTTCTCAACATAGCAGACGTAACGTCCGCTTTTAGAGAGTCGTATTTGTTTACAGAATTCACCCATGCTCATTTGCTTCGTGGTGTGCGTCTCTCACTAACATTTGCCTTTGTTGTTGGATGTTTCAATTGTTCTCTCTGCCAGTTAGATGTATGTGGTCATGCTCCCCTCAACAACAAGATTGTTGGAGGAGAAAATGCAGCAGCAGGGTCCTGGCCGTGGCAAGTCAGCATTCAAAGTGTCAGTTTTGGAGGCCATTTTTGTGGCGGGAGTCTGATTAATAAAGACTGGGTTTTGTCTGCTGCTCACTGCTTCCAGAGTTCCTCCCTGGGTACCATTGAGGTCTACATAGGACGTCAGATCCAGTCGGGCTCAAACCCTTATGAGGAATACAGGACAGCGAGTCAAGTCATTACCCATCCTAACTATAACAATCCTAGCGATGACAACGACATAGCCCTGCTCCAGCTCTCTTCCTCCGTGACTTTCTCTGATTATATTAACCCAGTCTGTCTGGCTGCTGCTGGTAGTACATTTGCTGCAGGTACAGAGAGCTGGGTCACTGGATGGGGAACGCTACAGTCTGGAAGCAACCAGATTTCTAACATACTGCAGGAGGTGATAATACCAATTGTGAGCAACAGTGACTGTAATAATGCTTATGGAGGTGGCATCACAAGCAATATGATTTGTGCTGGATTGTTGAATCAGGGAGGGAAAGATTCATGTCAGGGAGACTCTGGAGGTCCAATGGTCTTTAAGAATGGCTCCCTGTGGATTCAGTCTGGCATTGTGAGTTTTGGTCAAGGATGTGCTGATCCCAACTATCCTGGTGTATACACCCGAGTGTCTCAGTACCAGGACTGGATCAACTCTTTGATCATGGGCAGCAACCAGTCTGGATATGTCTCCTTCACTAACCAGCCTGGATATGTCTCCTTCACTTCCGATGGATTCAGAAGCTCACCTAACCTGCTTTTATTTTCCATTTCTCTCACATTCTCCATTATTCCTTTCATATGCTCCGTATTTCTCTCTTCATAGAGATTATTTGAATGACAATACTCAGGGTTCTTTGATTGAAAGGACAATTGTACTGTACAAGTTCTCATAGGCGAAGAGAGCAGGTATATGTTTATGCTGTCATTTATTCTTTATCATTTAAAAATATACTAATCTTGGAAAGCTACTCTTATGATTGAGTACATTGTTTACATTTAAAGTTTGTGCACTAATGAAGTTCAGCAAGCATGTGAACTGATATTTAGAGACTATATAAGAGACTACTGAATTTATTTTGACTAGGTGTATTACACTGCAAATACACTGGAGCCACTTTTGTATTAATATATTATTTACAATAACACTCAGTCTGTCTGAATATCTGTAATTAAA

Function

NR:

description
Zgc:101788

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_03255619_03266388.mRNA True 2736 mRNA 0.39 7 3255268 3267690

Neighbor

gene id symbol gene type direction distance location
CI01000034_03250695_03253982 NA coding downstream 1066 3250402 ~ 3254202 (-)
CI01000034_03247806_03248810 NA coding downstream 6321 3247794 ~ 3248947 (-)
CI01000034_02875948_02953386 CRHR2, CRHR1 coding downstream 300748 2875658 ~ 2954520 (-)
CI01000034_02778206_02786310 CDC27 coding downstream 468958 2777700 ~ 2786310 (-)
CI01000034_02712912_02755978 KANSL1B coding downstream 499290 2712687 ~ 2755978 (-)
CI01000034_03285980_03289258 NA coding upstream 18100 3285790 ~ 3289258 (-)
CI01000034_03577874_03611044 NA coding upstream 309764 3577454 ~ 3611099 (-)
CI01000034_03659420_03661699 NXPH3 coding upstream 391600 3659290 ~ 3661699 (-)
CI01000034_03803160_03827982 NGFRA coding upstream 535142 3802832 ~ 3827982 (-)
CI01000034_03911480_03913846 TMUB2 coding upstream 643385 3911075 ~ 3913846 (-)
G172016 NA non-coding downstream 19921 3234963 ~ 3236615 (-)
G172019 NA non-coding downstream 21556 3233519 ~ 3233712 (-)
G172025 NA non-coding downstream 23271 3227359 ~ 3231997 (-)
G172020 NA non-coding downstream 41174 3210706 ~ 3214094 (-)
G172031 NA non-coding downstream 64759 3189912 ~ 3190509 (-)
G172122 NA non-coding upstream 36337 3304027 ~ 3304263 (-)
G172030 NA non-coding upstream 56794 3324484 ~ 3325211 (-)
G172021 NA non-coding upstream 61120 3328810 ~ 3330494 (-)
G172147 NA non-coding upstream 119942 3387632 ~ 3387869 (-)
G172148 NA non-coding upstream 120312 3388002 ~ 3388238 (-)
CI01000034_02510595_02511512 NA other downstream 743747 2510061 ~ 2511521 (-)
G171835 NA other downstream 808975 2441821 ~ 2446293 (-)
G171755 NA other downstream 1388895 1864118 ~ 1866373 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 1937014 1311529 ~ 1312780 (-)
G172151 NA other upstream 123823 3391144 ~ 3451802 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 898809 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 948522 4216212 ~ 4221881 (-)
G172593 NA other upstream 1725270 4992960 ~ 4994943 (-)
G172800 NA other upstream 2521342 5789032 ~ 5789738 (-)

Expression


Co-expression Network