CI01000034_04216451_04218876


Basic Information

Item Value
gene id CI01000034_04216451_04218876
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4216212 ~ 4221881 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04216451_04218876.mRNA
ATAAAATATATAATGTTTAATATCTCGGAAATTCAGTCAGCACAAATGTTCGTTTTGCAGTGTAAACTAGAACAATGCACAAATTCATCCATTTGTTCATTATTCCATTATATGAAGCGCTGACTCGAGTTCACAGCATTTTTAATTTTTTTTTTTTTTTAATGCAACAATAACAAAAACAAGACAAGATAGTAAAACAATAATGAACAAATATAAGCAATTAAACACATTAGGGTTACAAAACAAAACGGCTTGCACAGAAGTTTGAAGATACCTTTTAACATAGATTGAAAAGTCAAAAAAACAGCAATGGGAAGCGATTATCTGAAACGTCAGAGAGGGGGCGTTCCCTATCCGCGGGAAATCCAAACCCATTCGTGTTGCGCTCATAGAAAATAACTAAACACGGAACTCTAGGAAACAATGGTATGGAATGGAATTCGAATGGAATTCTATATGGAATTCAACAACACAGGTCAGACTGGTTCTGCTTTATCCACATGTGTATTCTTAAACTATAATGGCTTTCTTACGCGGACTGTTTTCTGCTTCCTGTACCTACTGTATTTAATAACAAGATGGACGACATCATTCATGTCATAGTTAACTTATAGTCGCGATTTCAAGCGATTATATGCAGTATGTGTAAATGGATAAACAATTAGCTATCATAAGACATTGGTGAAGAAACTTTTGAGCACTCGCTATGACAATAAAAGACGTTTTAACGAATGTTGATTGAAGCGAGTATAACCTTGTATAGCAACCCGAGATCAGAGCTATATTTGATTACACAAAATATGTCGCTTTCTAATAATTATACTAATTTAAGTATTTCTTACCACAGATAGGACTACCATAATTGAACGCCTATGGGGGTTTCTAAGAAGAGCCTGGACGTTCCTGTGCCGCGGTGGACATAATAACTCTGGTGTGTAACTACATTATTCTTGAATACATTTAAATAATAAAAGTGTATAAACAAACTGAAAGCATTGGGAAGTCAGACAATGTGCTTATCCAATTCATAAACAGAGATTCCGTTGTCAGTTGAAGAAACAGCGCCACCTCTTGGTTTGAGCACTGTACGACCATGGAATTACAGTGAGGATGGAGTTATAATTAGAACGGTTTAGGTGAGACACTTTCATTTACTAAATTCAGATCAAAGTGAAATGATCTATTTTATCAATTTTGAGTTATGCAAATTGATGACATCATATTGAAGTGTTCCATTGAACAATTCTAATGGCCACTCTATTCATTCCATACAGAACACTTGGATTAAGATGAAGAAACTACTTCATAAATTTCTCACTTCAGAGATGGAGGATTAGCCCCCTTGTAATCATCTTCGTCCCAGCCACTTATATCACAAATTCGTGAGAGGAGTCGATGTCAGGAGGTGGGGCAGAGTTATGGTGCTCTCGCCTCAAGTTGTGCACAAGGAGTTTTGGACCTCTGTTGGGTTTGTTTTGGTCCATGCAAGGCATCAGTAGAGCATAATCTAGTCTATTTGATGTGGGAGTCCTGCCAAGTTGTTGGCCAGCCCTAAGATATAATTTGGCCAACAGTGAAAATTAGATTTCTGTAGTCAAGTGATACAATCATTCATTCACTCTTCATTGTAAGACAGATTATCAGGGCTGATGAGTGTGATATTCCTTTTATACCAAAATTCTAATTGTAAGTAACCAGTTAGTAAGTACATTTCTTCTCTTCCAAAGAAAATAGTTTCAAAAGAAGCCAAAGCATCCAGCTTTTTGCATGTTACCAAACAATGCACACTGAATAATATGGAGGACAGTAACAAAGTATATTTACATTTATCTGTACGTTATTGGAGTATTTTCATTTTACTTAACTTCAAGGCATAATATCTTACTTTTGCTTCACTGCATTTCATAAATATTGTGCCTTGCTCCTCATTCATGTGTAGACATGGTGGTGATGTCTGATAGGCAGTGCTGGGTACATTACTTACAAGTTCTTTAGAATTTATGAGCGAAAAAAATGTCTGTAGCCTATTCTTTTAAACTAAAGTTGCAGCTATCTCATAATCCCATCACACAAGCCGGTATTTTGTTGTTGTTCCGTCTCTTTAGTTTCCTTTTTTTACTGTAAAACAATGGCCCAGGCAAGTGTTAACACCTTGTGGAACAACTGATTAGTGCAAAACAAATTCATTGTGCACGACATTTGCATCATGGACCCTCGAATACACGTACAAACAGAAGTAAACTTTGGGCTTTAGGCCTAAGCATTACATCACGAGTTTTCATGGGGTTTCATGAAAGAATTGCAGGGGTTTATGATCAAATTTAAATAAAAAATTAAATCATAAAAAAATCTAATTAAACTAATTAACTCATTTTCAAATAAAAGCAAATAAAAAAAAAAAATACCTGAACAGTAAAAATAGAAGTACGTTACTGGAGAAGTACTGGAGTGTGTGCATTTACACAAAATGTAAGTGGAATAATTTTTTAGAAAGGAAATTTTAAAAGAGAAATAAAATATGAATATAGCGAATCAGTAAATTATGAATAATCTACTGCCATTGTGTGAATAATAATATGTAAAGATGTAATCCATAAAAAGTAACTGTAACCTGATTATGAGCATTTAAAAACACTTAATTTTTTTAATCTGATTAGATAATCCAGATTACACTACCCAGCACTGCTTATAGGAATGAATTATTCTTTTGAGATTATTCTTTTGATGATCATGTTAAATTGGTTCACAAATCACAATGAACAATTCATTCATGAAGTAGAGTGATCCAGCTGTAATCAGGTCAGAGAGGGTCTCTAACAACTCACCAAATTGGTCATGTCCAACTCAAAATGGACAAGTGACCCTCAACTTGAGCTTGCAGAGGATTTGACTGAAAGTGGAAAAAGTTACCAAAGCCAAATGTTAGTATTGTTTTTGTTTTTTGTTTTTGTTTTTACATAAAATTCATATTTATGTTATGCATGTTTTTGAGCTAAATCTGTCTAATGAAATGCTTGAATGTGTATATACGTCAGAAAGAGCTTCATAATGGTAACTGTCCCTATATGACTGCGTATAAGCTGGTGACAGTTCATTTTCGCTGGTGGGGTCTGCAGGGACGTGTGGAGAACTTCATTCATAAGCAGGAGAAAAGGCTCTTCACTAATTTCCACCGGCAGCTCTTTTGTTGGCTGGACCGCTGGGTGGACCTTAGTATGGATGACATTCGTAGGATGGAGGAAGAGACACAGAGGGAGCTGGACCAGGAATTCTTGTGGGAACTTGTATATGCCTCAAGAGGTAGGATCATTGGTGTCGGATTAAAGAAACTGAGATTAAAGGAAAACGGCTCGAAGCATAACGGTTTTCTTGTTTAGTTATGGTGGTCTTTTGGTTCGGTTCGGTTCTGCACTGATTGCAGTGTGGATGTCGAGAGCATTGAACTGATACGGTTTCATTTTTAAACTGAGTGTAAGAGCCTTGAAACCCCTCCCACATTTGGCTGACATGCTACAGGCCACACCCCTCTGTTCGGGTGGGGATGGTCTGAATTTTTGGAAAATGAAGTTCAATTTACAATACTGAAACAATAAA
>TU195733
AGAAAGAGCTTCATAATGGTAACTGTCCCTATATGACTGCGTATAAGCTGGTGACAGTTCATTTTCGCTGGTGGGGTCTGCAGGGACGTGTGGAGAACTTCATTCATAAGCAGGAGAAAAGGCTCTTCACTAATTTCCACCGGCAGCTCTTTTGTTGGCTGGACCGCTGGGTGGACCTTAGTATGGATGACATTCGTAGGATGGAGGAAGAGACACAGAGGGAGCTGGACCAGATGCGTAGCCAAGGTTCTGTGCGAGGGATGAAAGCAGGCGAGGACTAAGGAGCATCAAAAGAATAGAAGAAACAAAATAGGGGCTACTTTTTATTTTACCTCCTTCAGTCCTCATGGCCAATCACAACGTGCCACATCATGAAGCCCTTCCGAACAGGAAACTGTCATCCCTTACCCAGGACATGTCCATTACCATGAGTGTGAATGCTTTTGTGCGAATGAGCAGAGTATGCATGTGTATCAGTGGTTTGTGCAGTCTGACTTTAAACCTCATCATTTGCTGCCAAATTTTTTTGGATTCACTTAAGGTATGTTAAGTGATGCCGGCATTTCTTTTTATAATTAAGTATTATAACTGTTTAATGGTTTTTGGTTCATTTTGCAACCATCAGCTTTTTACTGAGTGCGCCAGTGGAGTAACGAATCCCAAGCCCGTTTCGCAGAGAGACTGGGGAAACATTTCACTACATGTATTTTGACCATAAATAAATGACTAAGTAATTTACTTCTTAATTCTGTTAAATTTGTCATGTTGTTCAGGAATTCTTGTGGGAACTTGTATATGCCTCAAGAGGTAGGATCATTGGTGTCGGATTAAAGAAACTGAGATTAAAGGAAAACGGCTCGAAGCATAACGGTTTTCTTGTTTAGTTATGGTGGTCTTTTGGTTCGGTTCGGTTCTGCACTGATTGCAGTGTGGATGTCGAGAGCATTGAACTGATACGGTTTCATTTTTAAACTGAGTGTAAGAGCCTTGAAACCCCTCCCACATTTGGCTGACATGCTACAGGCCACACCCCTCTGTTCGGGTGGGGATGGTCTGAATTTTTGGAAAATGAAGTTCAATTTACAATACTGAAACAATAAATAAAAGAAAACATTGACTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04216451_04218876.mRNA False 3594 mRNA 0.36 4 4216234 4221881
TU195733 True 1123 TUCP 0.42 3 4216212 4217742

Neighbor

gene id symbol gene type direction distance location
CI01000034_04174469_04189564 SEZ6L2 coding downstream 26670 4174416 ~ 4189564 (-)
CI01000034_04165535_04172272 KCTD13 coding downstream 43962 4165373 ~ 4172272 (-)
CI01000034_04154954_04164874 NA coding downstream 51360 4154651 ~ 4164874 (-)
CI01000034_04101415_04114654 ITGB3A coding downstream 101580 4100622 ~ 4114654 (-)
CI01000034_04090497_04095923 NA coding downstream 120311 4090232 ~ 4095923 (-)
CI01000034_04239062_04242494 NA coding upstream 16890 4238771 ~ 4242640 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding upstream 96663 4318544 ~ 4320127 (-)
CI01000034_04350907_04363668 NA coding upstream 128725 4350606 ~ 4363683 (-)
CI01000034_04370706_04374491 SPC24 coding upstream 148745 4370626 ~ 4375413 (-)
CI01000034_04376314_04386958 NA coding upstream 154433 4376314 ~ 4386958 (-)
G172402 NA non-coding downstream 3432 4212454 ~ 4212802 (-)
G172398 NA non-coding downstream 14182 4201813 ~ 4202052 (-)
G172384 NA non-coding downstream 89388 4125119 ~ 4126846 (-)
G172379 NA non-coding downstream 99020 4116979 ~ 4117214 (-)
G172378 NA non-coding downstream 99300 4116483 ~ 4116934 (-)
G172411 NA non-coding upstream 36674 4258555 ~ 4258786 (-)
G172412 NA non-coding upstream 37385 4259266 ~ 4259613 (-)
G172413 NA non-coding upstream 39089 4260970 ~ 4261263 (-)
G172414 NA non-coding upstream 41445 4263326 ~ 4263835 (-)
G172415 NA non-coding upstream 43202 4265083 ~ 4271495 (-)
G172151 NA other downstream 818421 3391144 ~ 3451802 (-)
G172016 NA other downstream 979619 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1704713 2510061 ~ 2511521 (-)
G171835 NA other downstream 1769941 2441821 ~ 2446293 (-)
G172593 NA other upstream 771079 4992960 ~ 4994943 (-)
G172800 NA other upstream 1567151 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1575689 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location