CI01000034_04174469_04189564 (SEZ6L2)


Basic Information

Item Value
gene id CI01000034_04174469_04189564
gene name SEZ6L2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4174416 ~ 4189564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_04174469_04189564.mRNA
ATGGTGTCCACAGTTTTTGCTGTGACACTGTTTGTCACACTGCTACACCTAACTTCAGGTGCCTCTTTAGGGACATCAGACACTGAGGCTCCTCCCACCGTGACCTCTAGTCCCCGCCCATTGGGAGAACTCATCCATGCTGCACTTCTGAGTAAGGAGTACCTGGGCCACACCCCTAATAGCAGAGGTACAACTACTAACCCCACCCAGGCCGTCCCGTCCATCAGAGAATCAGAACCCTCCTCCACAGTGATGTCACCAGGAATCCTCACTACAGCAGTGACCTCATCGGCTGCACCTCATGCAGGCCAATCAGGTTTTGGGAGTGCTGTGACATCACCACCAGCTGAAGAGGAGACCACAACTACACTAATTACTACAACAACAATAACAACAGTGCACACACCAGTTCAATGCAATGCCAGCCTGTCAGGAATGGAGGGAATAGTCGAGTCCCCTGATCCGCTCTCATCCTCATCCCCCTTTTCCCCATTGGAGTGCACCTACAGCATCACGGTGTATCCTGGATATGGGGTTGAGATACAGGTAAAGAAAGTAAACTTGTCCAAGGAGGAGTCACTTACCATTCTGGAGCTGGGTGGGACAGCTCCTGAGCTTTTGGCCAATGAGACACTAATGAGCGAAGGTCAGGTGATTCGTAGCTCAACCAATCAAGTGCAGATCCACTATAAGAGTCTGAAGCAAGCCAATCATGGTGTTTTCAGCTTTCACTATCAAGCGTTCCTCCTGTCCTGTTCATTCCCCCTCTCCCCTGAGGGCGGTGGAGTGACTGTAACTGACATCCATCCTGGTGGTCAGGCTCACTTCCATTGTGATCCAGGATTTGAGGTCAGAGGTCATGAGGTTGCAACCTGTTTGAACTCCACCCGACCCAAATGGAGCACCCCAGAACCACAGTGTGTGGCTGTATCCTGTGGAGGATGGATTAGAAATGCTACTGTTGGCCGCATCCTCTCTCCAACCCTCCCCTCTGCAAGTAACCATAGCAGTGGTAGCAACCTGAGCTGTCATTGGCTGCTGGAAGCCAAGGAAGGCCATAGGCTCCACCTTCATTTTGAGAGGGTGGCTCTTGATGAAGATAATGACAAGCTGATTGTGCGCAGTGGGAATAGCTCTACAGCTCCTCTCCTCTTTGACTCGGATCTGGATGACGTTCCAGAACGAGGCTTTGTGAGTGAGGGAATGTCTCTCTATGTGGAGCTCACAGCAGATTCCTCCTCCATCCCACTGCTGCTGGCACTCCGCTATGAGGCTTTTGATGGGGAACATTGTTATGAGCCTTACCTGCCTCATGGGAACTTCAGCAGCAGCGACATCACCTTCCCACTGGGTACTGTAGTAACCTTCTCATGCTCTCCTGGTTTTGTCATGGAGCAGGGCTCAGGAGTTATGGAGTGTGTTGACCCCAATGACCCTCACTGGAATGAGAGTGAACCTGTCTGCAGAGCTCTGTGTGGCGGAGAGCTCACGGACCCAGTGGGAACAGTGTTGTCTCCTGACTGGCCACAGAGCTACTCTAAAGGGCAGGACTGTGTGTGGCAAATACATGTCAGCGAGGACAAACGCATCGAATTGGATGTACAAATTTTGAACATCCGCCATAATGACATCCTCACTCTATTTGATGGTCATGATCTGATGTCACATGTGATTGGACAGTACCTGGGCTCAAGAGAGAGGTTCAGGGTTGTATCAGGAGGTTCAGAGGTCACCATTCAGTTTCAGAGTGATCCCGATGACTCTACGTTTATACTGAGCCAAGGCTTCCTCATTCACTACAGAGAGGTGGAACCAAATGACACTTGCCCTGCCCTTCCGCAAATTGAGTTTGGCTGGAGCAGCTCCTCCCACCCGTCTCTGGTGAGAGGCAGTGTGTTAACCTATCAGTGTCAGCCTGGTTATGACATTGTCGGCTCTGACATCATCACCTGCCAATGGGATCTATCCTGGAGCAACAACCCGCCCACCTGTGTGAAAATCCAGCAGTGCCCTGACCCAGGAGAAGTGGTCAATGGAGCACGCTCAGTACATCCGGAGTCTGGTTTTGCTGTGGGAACCGTGGTACGCTTCACATGTAACCAAGGTTATCAGCTGGAAGGCCCGAGCCAGATCTCTTGCCACGGCAGAGACACCGGCATGCCCAAATGGAGCGACCGCAGCCCAAAGTGTGTCTTAAAGTATGATCCATGCCCAAACCCGGGCGTGCCGGACAACGGCTACCAGACTCTGTACAAGCACAGTTACCAGGCAGGTGAGACGCTACGTTTCTTCTGCTATGAGGGCTACGAGCTCATTGGGGAAGTCATCATCAACTGTGTCCCGGGACACCCCTCTCAGTGGAATAGCCCACCACCCTTCTGTAAAGTGGCCTATGAAGGGTTACTGGACGATCATAAATTGGAGGTTTCTCAGTCATTAGAGGCATCTCATCAAATGCTGAGTGAGAACATTGCATTGGCCATCATCCTGCCAATCATTCTGGTCATCCTTCTGATTGGTGGAATCTACATGTACTACACCAAGTGGCAGTGGAAACCATTGTTCTGGAAGTCTCTCTCTCACACCCACTCCTACAGTCCTATTACAGTGGAGTCTGACTTTAACAACCCTCTCTATGAGGCAGGGGACACACGAGAGTATGAGGTGTCCATCTGAGACAGGAGTCTTCAAATGAATCCAAATTGTGGGTGAATGAAAAGGAGAAGAAA

Function

symbol description
sez6l2 Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human SEZ6L2 (seizure related 6 homolog like 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_04174469_04189564.mRNA True 2729 mRNA 0.51 18 4174416 4189564

Neighbor

gene id symbol gene type direction distance location
CI01000034_04165535_04172272 KCTD13 coding downstream 2144 4165373 ~ 4172272 (-)
CI01000034_04154954_04164874 NA coding downstream 9542 4154651 ~ 4164874 (-)
CI01000034_04101415_04114654 ITGB3A coding downstream 59762 4100622 ~ 4114654 (-)
CI01000034_04090497_04095923 NA coding downstream 78493 4090232 ~ 4095923 (-)
CI01000034_04087755_04088054 NA coding downstream 85652 4087563 ~ 4088764 (-)
CI01000034_04216451_04218876 NA coding upstream 26670 4216212 ~ 4221881 (-)
CI01000034_04239062_04242494 NA coding upstream 49207 4238771 ~ 4242640 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding upstream 128980 4318544 ~ 4320127 (-)
CI01000034_04350907_04363668 NA coding upstream 161042 4350606 ~ 4363683 (-)
CI01000034_04370706_04374491 SPC24 coding upstream 181062 4370626 ~ 4375413 (-)
G172384 NA non-coding downstream 47570 4125119 ~ 4126846 (-)
G172379 NA non-coding downstream 57202 4116979 ~ 4117214 (-)
G172378 NA non-coding downstream 57482 4116483 ~ 4116934 (-)
G172297 NA non-coding downstream 110255 4063892 ~ 4064161 (-)
G172366 NA non-coding downstream 127276 4046675 ~ 4047140 (-)
G172398 NA non-coding upstream 12249 4201813 ~ 4202052 (-)
G172402 NA non-coding upstream 22890 4212454 ~ 4212802 (-)
G172411 NA non-coding upstream 68991 4258555 ~ 4258786 (-)
G172412 NA non-coding upstream 69702 4259266 ~ 4259613 (-)
G172413 NA non-coding upstream 71406 4260970 ~ 4261263 (-)
G172151 NA other downstream 776603 3391144 ~ 3451802 (-)
G172016 NA other downstream 937801 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1662895 2510061 ~ 2511521 (-)
G171835 NA other downstream 1728123 2441821 ~ 2446293 (-)
G172593 NA other upstream 803396 4992960 ~ 4994943 (-)
G172800 NA other upstream 1599468 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1608006 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026213 sez6l2 coding NC_007114.7 CM002887.2 15232181 ~ 15264732 (-)