G171712


Basic Information

Item Value
gene id G171712
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1740644 ~ 1741140 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195072
CAAATTTTTCTTATTTCGCTTGAATATAATTTTTTTTCATTTAGTGCTGCCCTTCAGAAGCAACAGAAAATACTTGCATGTTTCCCGGAAGACAAATTAAATACAATTTACCTTGATCTTCAAATTCCAAATGTTTTCACCCCCCATCTATTAATGCATCATGTTTTTTTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCAGTTGTCCTCAGTGTGAAAAGATGGATCTCAAAGTCATTCAGTCACTGCTGTAAAGGGTTCAAATATGCAAAAAATGCTGGAAAACTGAAGAATCTGCAGGACCTGGAGGATTTTTCTGAAGAACAGAGCTCAGTTTAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195072 True 366 lncRNA 0.35 2 1740644 1741140

Neighbor

gene id symbol gene type direction distance location
CI01000034_01718736_01720031 HOXB13, HOXB13AB, HOXB13A, HOXB13AA coding downstream 20398 1718606 ~ 1720246 (-)
CI01000034_01703545_01705527 HOXB10A, HOXD10A, HOXA10 coding downstream 34601 1702892 ~ 1706043 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding downstream 42217 1694041 ~ 1698427 (-)
CI01000034_01684215_01687260 HOXB8AB, HOXB8, HOXB8A, HOXB8AA coding downstream 53384 1684177 ~ 1687260 (-)
CI01000034_01680053_01683539 HOXB7A coding downstream 57105 1679589 ~ 1683539 (-)
CI01000034_01785791_01788743 NA coding upstream 44095 1785235 ~ 1789815 (-)
CI01000034_01842093_01847705 NR1D1 coding upstream 99797 1840937 ~ 1847705 (-)
CI01000034_01957876_01995623 NA coding upstream 216736 1957876 ~ 1995816 (-)
CI01000034_02010544_02026521 NA coding upstream 269002 2010142 ~ 2026725 (-)
CI01000034_02092229_02092596 GNGT2, GNGT2A coding upstream 350819 2091959 ~ 2092642 (-)
G171704 NA non-coding downstream 29687 1710678 ~ 1710957 (-)
G171631 NA non-coding downstream 338732 1400324 ~ 1401912 (-)
G171582 NA non-coding downstream 492291 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 542374 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 613001 1126485 ~ 1127643 (-)
G171724 NA non-coding upstream 23361 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 39706 1780846 ~ 1781056 (-)
G171751 NA non-coding upstream 86456 1827596 ~ 1830627 (-)
G171785 NA non-coding upstream 112893 1854033 ~ 1855451 (-)
G171759 NA non-coding upstream 119442 1860582 ~ 1861091 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 422390 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 663422 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1156361 571856 ~ 577775 (-)
G171229 NA other downstream 1473398 229404 ~ 267246 (-)
G171755 NA other upstream 122978 1864118 ~ 1866373 (-)
G171835 NA other upstream 700681 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 768673 2510061 ~ 2511521 (-)
G172016 NA other upstream 1493823 3234963 ~ 3236615 (-)
G172151 NA other upstream 1650373 3391144 ~ 3451802 (-)

Expression


Co-expression Network