CI01000034_00571856_00577732


Basic Information

Item Value
gene id CI01000034_00571856_00577732
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 571856 ~ 577775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00571856_00577732.mRNA
ATGGATCTGTCAGAACTAAACAACGTTTTCAGCCTGCCCGACACAGATTGGAATATAAAGTGGTCTGGACAAAATCAATTATCGCTAAAATATACACAAAACAGTACATTTCTTGTTAAGACTCAACCACCAGATAAGCCCACTGTAAGCAGGGATAACATAACTTGGAGTAAAGGCAGAAACTTTCCAGAAGACATAACGGATTATGAATTCCAGCTGCAGTTTAAAGCCGCAGATACAAGATGGGAGATGGCAAGGCATTGGAATATCTCTCATGGAAGTTACGTGCTGCTGGACCATCAGTCCCTGACTGCAGGAGAAGAGTACCAGGCCAGGTATCAAGCATTATTATGTCTTTGCAGGTTATTAAAATCAAACCATCAACATGTTCCAGACCCCTCCAGATATTTCCAGCCTCTTCACACTGTTCATGGTGGAAACTTCCGGAACTGGCTGGGCTTTCAGAATTCTGTTGGGCCATTTCTTACCCCTCAGTCATGTGACGATATCTCACCTGTAGAGATCTCTGATATTTGGGACCTGTCCTTGATGGATCCCGACGCTCAGATGGCTACTTCCGTGCTTGTTCACTCCAATCAGATGGACTCTGGTCTCGAGAACAGCGGCACCAGCCATGCTTCATCATCTGGTTTCTCTAACATGGGCTACTTCTATAGCAAATCGCATTCAGGCTCTCTTTACCTCGAATCCTGCCCCGTGTACTTCACCTATCACCCTGAGGAAGGCACGAGCTCCACTGCCTCGTCGCCTAGGTCTTCATATGACTGTTTGCAAACCCCAAGTTACCAGATGGAACAGCTGAATAGCCCGGATTCAGGGTTCGACATGCCTGGAGAGCAGAATTGTGAGGAAGACCAAGATGATGATGACATCAGTGGCGAGGAGAGGGCCGCGGCAGAAGGACGTGCGCTGGTTTCCTTCATTATGTCACTGTCACAGGGTTCCCTCGGTGCTGTTCGGCCAGCAGAGAGTTTCACTCCGGTGCCCATCATCACACCGTGGTCTGAACCTGTGAGAGCACCCAGCCGTAGTTCCATCTCTGAGCCTGCAGAGGGCGCCGTGGTCAGACCCTCCTCCATGATTGAGCCTTGCGGGAGTGGATATTTGACCCTGAAGGAGATGCAGAAATACAGCAACAAATCCATCTGA

Function

NR:

description
class I helical cytokine receptor member 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00571856_00577732.mRNA False 1170 mRNA 0.49 6 571856 577732

Neighbor

gene id symbol gene type direction distance location
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding downstream 9861 558243 ~ 561995 (-)
CI01000034_00368808_00390623 NA coding downstream 180549 368486 ~ 391307 (-)
CI01000034_00361018_00362033 MCHR1B coding downstream 209823 360914 ~ 362033 (-)
CI01000034_00101894_00115404 NA coding downstream 456452 101052 ~ 115404 (-)
CI01000034_00097095_00098729 MFSD6L coding downstream 472733 97026 ~ 99123 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding upstream 21341 599073 ~ 603301 (-)
CI01000034_00604811_00614185 MPST coding upstream 27034 604766 ~ 614674 (-)
CI01000034_00627328_00635193 NA coding upstream 49287 627019 ~ 635193 (-)
CI01000034_00648618_00659733 ST13 coding upstream 70154 647886 ~ 659733 (-)
CI01000034_00728121_00732221 NA coding upstream 149706 727438 ~ 732221 (-)
G171382 NA non-coding downstream 18177 553304 ~ 553679 (-)
G171356 NA non-coding downstream 103148 465412 ~ 468708 (-)
G171309 NA non-coding downstream 129600 441287 ~ 442256 (-)
G171341 NA non-coding downstream 158819 412672 ~ 413037 (-)
G171340 NA non-coding downstream 159429 412193 ~ 412427 (-)
G171451 NA non-coding upstream 165334 743066 ~ 743771 (-)
G171530 NA non-coding upstream 386265 963997 ~ 964217 (-)
G171531 NA non-coding upstream 388107 965839 ~ 966103 (-)
G171404 NA non-coding upstream 500630 1078362 ~ 1080996 (-)
G171549 NA non-coding upstream 544685 1122417 ~ 1122719 (-)
G171229 NA other downstream 304610 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 493881 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 733797 1311529 ~ 1312780 (-)
G171755 NA other upstream 1286386 1864118 ~ 1866373 (-)
G171835 NA other upstream 1864089 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 1932081 2510061 ~ 2511521 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G317654 NA non-coding NW_019172879.1 APWO02000076.1 176424 ~ 178282 (-)