CI01000034_00101894_00115404


Basic Information

Item Value
gene id CI01000034_00101894_00115404
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 101052 ~ 115404 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00101894_00115404.mRNA
TCGGTGGCGTGTCCTCAGTCGTGGAGTCTAGTCTCTACCACAATGTCCATTCCATCCTCAGAGAACTGGACTGTGAACCTCAAGCTGGATCAGCCTGCAATAAAGGCATGTTGAGATGGACTCTGCATAACAGGGTTGACAGAAATCCATCTATCAGTGTCCCTCTGGTGAGGGTTCTGATAAAAGAGCTTGAAAAGGCGGAGAGAATTGATTCTAAGGTCCGCATCATTCCTTTACTTCACACACTTTCCTACGCAGTCCTACAGTCTGTATTTATTCCAGAAGACCTCTATCAAAGGATGTACATTTGCCTGAAAAGTTTAGTTACATTACCTGTACCTTACTGTACGATTGCACTCAACTATGCAAGACAGATGAAAATGGAACAAATTGCACCAGGAATACTTTATCAAAGGAGAGTTATTGCTGAACACAGCCTACGTAATGATCTTTATCCACTTCATGAGAAGGTGTTTGTGTTCATAGATCCCGCTGTGTTTCCTCTGTCTCTGGTGAATGCGCTCAAGGCTGACGTGGAGTGTGCGGACCCTGGTGGAGACTCACTGATCTACAAACGCAGGGTTTTACTGCACACAGTGATAGCTGGATTAGGAAAGCAGTGCCGTGTTAACCAGCTCACACATGCTCTAGAGCATTTAGGTGAAGACCTGGAGCTGCACTTCCAGGAGGTTGTCACCATCCTAGAGCAGAGAACAGAAGATGGAGCTTCTGACGATAACCAATACAAAATGAGATTACAAAAGATCTACCAAGCCATCCTGACTGCTGCAAAAGATCCATCGTGTCCAGCCTCACAAGCGGAAACTCAGCTGCCCAGTCCAGAGGTCAGCTTCCATGTCTGGACCAAAGAGGATGAGATATGGAATGAGCTGGTTAACTTTGCACTGATGGTTCCTGCAGACCGAAACTCTGCTTATCTGGACGAGGATGACCTGAAGCGTGACTCTGTTATGTCCACCATGTCCACGGACAGTGGCATCGAGGGAGACATGCCCATCAGTGAGTTCTCCGCTATAATGATAGATTCTCAGGGCTGCCCAGAGGACCAGAGCAGCTCTCAGTCCTTCTACAGGAGGCCGTGTGTGCGACTGCCCAAAGCTGGGAACAGAATGACGCTCATGATGGAGGCCATTAAGGGAAATGGTGGATACGTCCTCGCTAAAGAGGAAAGGAACCTCACGGCTCGTATTGTTGTTATGGGTGATGACAGAACTCTAGGACGGCTAGCCAAGACTCTCTACACTATTCGGAAAAGGGAGGCACGACATCTGCTGCTGACAAAGAGAGTGAATCTGGAGATTTATTACATTCCAGTGACTGACCAGTCTCCGCCTTCCATTCAGGAGGATTTTCCTGAAGACATGCTGACACTGGCAGGGTACTTGGGAAGCGTGGATTTGTGGTATGACTGTAACATTGCCGGTTTGGGAGCCATGATTCTAAAACTGGCCCAAATGCAGACAAGTCAGAGCGAATCTTCAGACCCCAACACCTTCCTGCTAGATATTATCTCGTACTACACACGTGTCAGCCAACATCCGGTGCACCTTCCTATCTACTCTGTCAAGATCTGCTTCTCTGGCCTCAGCACCCACACAGTGGAGGAAGTGTTTGTGGCTCAGCTCGCGATGGACTTCCCCGAGGTCAAACGCTACAGAGCCACATTTAAAGACACAATTAAAGGTTTACATAGTGTCAGCGTAAGTTTCCAAGATACGATTCCCACAAGGCCCAGCACGCCTTCATTCAGAGCTGTTAGTGTCAATATCAGAGTCCTGGAGGAGCGGACGTTCACGGTGTGTTTGGATAAAGACTCACGTAAAACATTCAAGAATGTCCAGAGCATTGAAGTTTCTCCATGCTTGGACCCGGGATACTGCCATCAGCCGAGTACCAAGTCCAAGTACAGTTTTGGAGAGGGAGTTGAATCACTGAACAAATACCTGAACAAGACTCTCACTCTACCAATCAACACCTTCTGTGGCAATGAACAATGACATAATGACTCAAATTCATGATATAGGTGCTTGAGTCATGATACAAACTAAAACCTTATACCTCTCTGAGGCTTTTATTGTTTGTACATTTCCTCTTTTTGCCACTTCTCTGTTGTCTAAAATACATGTAACCTCAAGAGGCCATGTCTTCCTGCTGAACTATGAACCGACATGCTGTGCATAGACTGTGAATGTGGGCTGGAGTTATGCTGAAATAGTGTCAACTTGATTGCACAATTTTTGCAAAACGTCCTGCAGTCTGCACATTTCAATGTCATGTTTACACTACAATAATGTGTTTGTCTGTTACTTGGATATGTAATTTAACACTTTGGAAGCACTTAGACTTTCATTTAACACTTGCCAATAATTAGCATAACAGAAAAAAACGCTTGGAAGATTTTGTTGCAGGCATTTTGGATCAGAATGGCATGCTAGCTAACATATTTTTCTGCAGTATGCAGTATATACACTGTGTGGAAACCTGTTACGTTTGCCGAAATGTGCAGTATAACCTCAAGAACAATATGTGGGATATTGTATTTTTTCACAATGCGCTCTATTTTTATTTACTGTGTGACAAATTAACCTGATATCAACTGTGATTTTTAAACATTTTCATCTTGACTCATGTTTTGATCACACCGTCAACAACTGTAAAGCAACATAGAACTAAAGAAAACAATATTATAAAACAGGCAACATACAGATTCATAATATTTTACAATAGTCTATATGTGCCGTTTACATTTTTCACAGCATTAAGTGGCTTCAAGAGCAAGTTCGTTACGTAAATCCTTATACAAAGAAAGGGTTTTGGACATTGGGCATTTGTGAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00101894_00115404.mRNA True 2860 mRNA 0.44 16 101052 115404

Neighbor

gene id symbol gene type direction distance location
CI01000034_00097095_00098729 MFSD6L coding downstream 1929 97026 ~ 99123 (-)
CI01000034_00071780_00082031 NA coding downstream 19021 71544 ~ 82031 (-)
CI01000034_00051315_00059354 TOM1 coding downstream 41698 50716 ~ 59354 (-)
CI01000034_00361018_00362033 MCHR1B coding upstream 245510 360914 ~ 362033 (-)
CI01000034_00368808_00390623 NA coding upstream 253082 368486 ~ 391307 (-)
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding upstream 442839 558243 ~ 561995 (-)
CI01000034_00571856_00577732 NA coding upstream 456452 571856 ~ 577775 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding upstream 483669 599073 ~ 603301 (-)
G171136 NA non-coding downstream 56953 43738 ~ 44099 (-)
G171131 NA non-coding downstream 57804 23190 ~ 43248 (-)
G171146 NA non-coding downstream 88167 11750 ~ 12885 (-)
G171177 NA non-coding upstream 54248 169652 ~ 187879 (-)
G171206 NA non-coding upstream 67620 183024 ~ 183365 (-)
G171272 NA non-coding upstream 175174 290578 ~ 335778 (-)
G171324 NA non-coding upstream 231445 346849 ~ 351155 (-)
G171339 NA non-coding upstream 282310 397714 ~ 399839 (-)
G171229 NA other upstream 114000 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 956209 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 1196125 1311529 ~ 1312780 (-)
G171755 NA other upstream 1748714 1864118 ~ 1866373 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025359 pik3r6b coding NC_007114.7 CM002887.2 25825043 ~ 25846962 (+)