CI01000034_00558341_00561924 (C1QTNF6A, C1QTNF6)


Basic Information

Item Value
gene id CI01000034_00558341_00561924
gene name C1QTNF6A, C1QTNF6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 558243 ~ 561995 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00558341_00561924.mRNA
ATTGTGTGGAACGTTATTATAGGGAGTGACTCTTATAAGTGCATATTTATTCTTTTATCTCAGATCGCACCATGTTTGGGTTCCTCCTGCTTGCCTGTCTATTTCTTCATCTAGTAGTCTCCGTACCTCAACCGCCCTGCCGTCGATGCTGCGACCACCTCCCACCACTAGATGACGCTGCAACTATAAGAGAAAGCATGCCTGAGGTCCGCGCATACATCAACATGACCATTCTCAAAGGTGACAAAGGTGACCGTGGAGAAAGAGGAACTCCTGGGAAGCCTGGGATTGAGGGTTCCCCTGGACCACGAGGGTCTGAAGGCCTTAAAGGAGATAAGGGACAAGCCGGAGCTCCAGGTGACGCCTGCAAGTCCCAGCATTCTGCTTTTTCAGTCGGCCGACGGAAGTCCCTTCACAGCGTTGACAACTACCAGGCCCTGATCTTTGACACCATCTTCGTCAACACCCCTGAACACTTCGACATGTTTGCTGGGAAGTACCGCTGCCGCATACCGGGAATCTACTTCTTCAATGTGAACATCCACACGTGGAACTTCAAGGAGACGTACATGCACATCATGCAGAACGACAGCGAGAAGGCCATCGTTTACGCTCAGCCCAGCGACCGCTCCATCATGCAGAGCCAGAGCGTCATGCTGCCTCTGCAGGAGGGCGACGAGGTTTGGGTCCGTCTCTACAAACGCGAACGCGAGAATGCCATCTACAGCGACGACGTGGACGTTTACATCACCTTTAACGGATACCTCATCATACCAGAGACTGAGTAAAACCAGAAACGGTGGCGGGAAGGAGTGAAAGGCATGATTATGGACAAGATGCTTGAAAATGTGCCAAAATGCTTGAGCAGTGAAGCAACTTTAACAAA

Function

symbol description
c1qtnf6a Predicted to be located in extracellular region. Orthologous to human C1QTNF6 (C1q and TNF related 6).
c1qtnf6 Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be integral component of membrane. Predicted to be part of protein-containing complex.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K19470 C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00558341_00561924.mRNA True 886 mRNA 0.51 2 558243 561995

Neighbor

gene id symbol gene type direction distance location
CI01000034_00368808_00390623 NA coding downstream 166936 368486 ~ 391307 (-)
CI01000034_00361018_00362033 MCHR1B coding downstream 196210 360914 ~ 362033 (-)
CI01000034_00101894_00115404 NA coding downstream 442839 101052 ~ 115404 (-)
CI01000034_00097095_00098729 MFSD6L coding downstream 459120 97026 ~ 99123 (-)
CI01000034_00071780_00082031 NA coding downstream 476212 71544 ~ 82031 (-)
CI01000034_00571856_00577732 NA coding upstream 9861 571856 ~ 577775 (-)
CI01000034_00599073_00603301 UBE2I, GM14176, UBE2IA, GM5931, UBE2IB coding upstream 37078 599073 ~ 603301 (-)
CI01000034_00604811_00614185 MPST coding upstream 42771 604766 ~ 614674 (-)
CI01000034_00627328_00635193 NA coding upstream 65024 627019 ~ 635193 (-)
CI01000034_00648618_00659733 ST13 coding upstream 85891 647886 ~ 659733 (-)
G171382 NA non-coding downstream 4564 553304 ~ 553679 (-)
G171356 NA non-coding downstream 89535 465412 ~ 468708 (-)
G171309 NA non-coding downstream 115987 441287 ~ 442256 (-)
G171341 NA non-coding downstream 145206 412672 ~ 413037 (-)
G171340 NA non-coding downstream 145816 412193 ~ 412427 (-)
G171451 NA non-coding upstream 181071 743066 ~ 743771 (-)
G171530 NA non-coding upstream 402002 963997 ~ 964217 (-)
G171531 NA non-coding upstream 403844 965839 ~ 966103 (-)
G171404 NA non-coding upstream 516367 1078362 ~ 1080996 (-)
G171549 NA non-coding upstream 560422 1122417 ~ 1122719 (-)
G171229 NA other downstream 290997 229404 ~ 267246 (-)
CI01000034_01062505_01083413 NA other upstream 509618 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 749534 1311529 ~ 1312780 (-)
G171755 NA other upstream 1302123 1864118 ~ 1866373 (-)
G171835 NA other upstream 1879826 2441821 ~ 2446293 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025350 c1qtnf6a coding NC_007114.7 CM002887.2 25216790 ~ 25222662 (+)