CI01000034_00071780_00082031


Basic Information

Item Value
gene id CI01000034_00071780_00082031
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 71544 ~ 82031 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_00071780_00082031.mRNA
ATGCCTGTGCACATAGAATACAAATTAAATATTGAGGGAGCTGAAGAGGATGTGGTGTCCATGGCTGACTCCACCATCACTGTGGAGGACATAGAGGGGGAGCTGTTCAAAATCGAGAGGATAAAGGATGCGCTGGTCCGGAAAGAGTCGGAGCTCAGATATATGATGGATGACATCCAGTTGTGTAAGGAGATCACAAGGCTCAAAAAAGAACTCCAGAAATTGGTTTCCATTCCAGCATCATTTATAGTTCCTTCTTTCACGTCAGCTTCTTTTCAGCACATCATGGTTGTGACATACTTCACTATAACTCTCCTCCTGTTTCCAAGGAGATGCACGAATGAAGCGTACACCACGGATTGTTTACTGCGGAAACCTCATTTCACAAATGCATACAAAGCTTTCGCTCACAGAAGAGACAAAGACAAGTCAAATGAGGACAGACAGCGTGAGGAGGAACTGCTTCAACAGATCCAGAAGCTGGTGGAGACGCGGGACTTTCTAGTGGATGACATGGAGTTTGAGAGGCTCAGAGAGCGAGAAGAAGACAAAGAGATGGCTGACTTCCTACAGACCAAATTTCCCAACAGGTGCCGCATGAAAAATCACACCAAGGATAAGAGAATGACGTCCAGAGCCCAGCAGACCTCATCTCCTTACATGACCAAGACGGGTGTCACCCTGCTGAAGGAGTGCTGTGGCTTCACCTGCTCCGTCATGTAGATACGTCAATGTAAAACAGGAGAGAGTGTAGCACAGAATGACAAGTAAACAAGCCCTCAGACCCGTGATTCAGCACAATATTTTCAAGCACTCTGTTTCACATTTCATAACAGACGGCAGTATATGGGCACCCGACTGATGTGCATATTATGCAGCATTATTGCATTAACCACCTAATGGAGGAGATTTGAGGTGTGTGTGATTAGATGATATGGTGTGTTCATTTTCACAATTAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_00071780_00082031.mRNA True 959 mRNA 0.45 7 71544 82031

Neighbor

gene id symbol gene type direction distance location
CI01000034_00051315_00059354 TOM1 coding downstream 12190 50716 ~ 59354 (-)
CI01000034_00097095_00098729 MFSD6L coding upstream 14995 97026 ~ 99123 (-)
CI01000034_00101894_00115404 NA coding upstream 19021 101052 ~ 115404 (-)
CI01000034_00361018_00362033 MCHR1B coding upstream 278883 360914 ~ 362033 (-)
CI01000034_00368808_00390623 NA coding upstream 286455 368486 ~ 391307 (-)
CI01000034_00558341_00561924 C1QTNF6A, C1QTNF6 coding upstream 476212 558243 ~ 561995 (-)
G171136 NA non-coding downstream 27445 43738 ~ 44099 (-)
G171131 NA non-coding downstream 28296 23190 ~ 43248 (-)
G171146 NA non-coding downstream 58659 11750 ~ 12885 (-)
G171177 NA non-coding upstream 87621 169652 ~ 187879 (-)
G171206 NA non-coding upstream 100993 183024 ~ 183365 (-)
G171272 NA non-coding upstream 208547 290578 ~ 335778 (-)
G171324 NA non-coding upstream 264818 346849 ~ 351155 (-)
G171339 NA non-coding upstream 315683 397714 ~ 399839 (-)
G171229 NA other upstream 147373 229404 ~ 267246 (-)
CI01000034_00571856_00577732 NA other upstream 494457 571856 ~ 577775 (-)
CI01000034_01062505_01083413 NA other upstream 989582 1062444 ~ 1083413 (-)
CI01000034_01312431_01312780 PRR15LA other upstream 1229498 1311529 ~ 1312780 (-)
G171755 NA other upstream 1782087 1864118 ~ 1866373 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025362 zgc:171844 coding NC_007114.7 CM002887.2 25857008 ~ 25894124 (+)