XLOC_025362 (zgc:171844)


Basic Information

Item Value
gene id XLOC_025362
gene name zgc:171844
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25857008 ~ 25894124 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050038
AATTCACCGGCAGAGGAGCGAAGCAGCCACAGTCTCCTCCGGCTCAAACTTAAAGTGTCCTGTGCAGCCACACAGCATGGAAAAAGGACGAAGCACCCCGAAACAGTACGGATCCCTAGATCAAACGGAGCTCTGCGAAGACACTGGCAAACAAGCTGAAGATGACGTGGTGTCCATGGCTGATTCCACTATTACTGTGGAGGACATTGAGGGAGAGCTCTTCAAAATCGAGAGGATAAAAGATGCACTCGTGCGCAAAGAGTCTGAGCTCAGATATATGATGGATGACATCCAGTTGTGTAAGGAGATCACAAGGCTCAAAAAAGAGCTCCAGAAACTGGTTTCCATCCCAG
>TCONS_00050039
AATTCACCGGCAGAGGAGCGAAGCAGCCACAGTCTCCTCCGGCTCAAACTTAAAGTGTCCTGTGCAGCCACACAGCATGGAAAAAGGACGAAGCACCCCGAAACAGTACGGATCCCTAGATCAAACGGAGCTCTGCGAAGACACTGGCAAACAAGCTGAAGATGACGTGGTGTCCATGGCTGATTCCACTATTACTGTGGAGGACATTGAGGGAGAGCTCTTCAAAATCGAGAGGATAAAAGATGCACTCGTGCGCAAAGAGTCTGAGCTCAGATATATGATGGATGACATCCAGTTGTGTAAGGAGATCACAAGGCTCAAAAAAGAGCTCCAGAAACTGGTTTCCATCCCAGACAAAGACAAGTCTAATGAGGACCGACAGCGTGAGGAGGAATTGCTTCAACAGATCCAGAAGCTGGTGGAGACGCGTGACTTTCTAGTAGATGACATGGAGTTTGAGAGGCTCAGAGAGCGAGAGGAGGATAAAGAGATGGCTGACTTCCTACACGGCAAATTTTCCAACAGGTGCAGCTTAAAAAGTCAAAGCAAGGACAGGAGAATGACATCCAAAGCGCAGCAGACTTCGTCGTCTCCATATATGAGCAAGACAGGTATCACGCTGCTAAAAGAGTGCTGTGGCTTCACCTGCTCCATCATGTAAAACAGCAGAGTGACACGTAAACAAACCCCCAGACCCCATGATTCAGCACAATGTTGTCAAGCTCTCACACATTTAATTTCATAACAGATGGCAGAAGGTGAGCGCCTAACTGATGTGCATTTTATGCAGCCACTCATTGATGACAGGCTGTGgagttattagaaaataaagcACCTCCGATGTGGTGATGGCAGAGTTGCTTTGACATCTCAGGTGTGCTTTATTTTCGAATAATTCTGCAGTCTGGAGTGAGTTATTCTGGTTATGCTACGGTTACATTTGTCAAGTTTTTGTCATCAAACACTTTCTGCAAGGTACCCCCGCATCCTAGAGATTTGGAGGTGTTGTTTCCCAGTAAAGGAAGTGACCTGGAGATTGATAGAAATGACCAAATGTCATGGGCCCAGTTTTTCAAGAAATGAAATCTGGATCAGATTGGTTCAGAATTGGAAATCCCATGTTTTGCTATGCAGGATTAAGTGATCTATCTTACTTTTATGACAGTTTTTTAAAAGAACATTGGGTTGGATTAATGTGATCCAAATACCAAATTTTAGGATTACCAAATCCTGTTTACCAAAGCCCAACAGCAAAGATCAATATGTAGGCAACATAGCAGTGGACACAAACAaccattgtttgtttttaatggtaagaaacagaaacactgcaatcaacaaacatttataagttttagtttGTTCTAATACAATACTGCTTTGATATTGTTTGttgttatttagcatttttattaggTGTGATATGCTTCAAATACAGGTAGGCTTCAAATATGAAGGAATCTATATATCATCAGTAACTATTAAGTTTGTGAtcattcacttaaaaaataaaacttttgaattttatttggtttattctgTTCAAAAAATCTCAACTGAATCCACCCTTCGGATGTGGGATaaatctttttctttcttttttttttgatcaaataGATCCCAATCTGAGTTTAAAGTTTTGAATAACCCAAAGGGCAGGTTTTATCCAAATTAAATGTAAGACTAGATTACATGGTCTGATCTTTATTAAAAATCCCtttgttacttttgaaaaacccatttcaaAGATTAGATCCAATCTGTGATCCAAAATCCcactggattacttttgaaatgCTGGGCCCAGGAAATAATCCTTTTTTATGCTTGgattaatttctgtattttagagtttttatttttcagttttaaacAAAATACTGTCCATaagcttacactgtaaaaatatctgagaATTTAGTTTTCcagattcatgtttttttttacttatttatgcttttgaattggatTATACGACTTTGACCTGTCCTTCTAacacttctgatgttgaaaaatgtgaaaagtaacttttattgacattttaatagtatAAAGTGATATATTTTCTGAGTTTGTGTTGTAAATTATAGTACATAAACCCGGTAATAAGCTGcc

Function

symbol description
zgc:171844 Is expressed in forebrain and hypothalamus. Orthologous to human BMERB1 (bMERB domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080516-8 Is expressed in forebrain and hypothalamus. Orthologous to human BMERB1 (bMERB domain containing 1).

Ensembl:

ensembl_id ENSDARG00000067813

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050038 False 353 mRNA 0.49 3 25857008 25881941
TCONS_00050039 True 2115 mRNA 0.38 6 25857008 25894124

Neighbor

gene id symbol gene type direction distance location
XLOC_025361 mfsd6l coding upstream 4429 25849560 ~ 25852579 (+)
XLOC_025359 pik3r6b coding upstream 10046 25825043 ~ 25846962 (+)
XLOC_025360 FP101990.1 coding upstream 11680 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 coding upstream 103459 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 coding upstream 110090 25745636 ~ 25746918 (+)
XLOC_025363 tom1 coding downstream 13142 25907266 ~ 25939259 (+)
XLOC_025364 NA coding downstream 91215 25985339 ~ 25986944 (+)
XLOC_025365 gcat coding downstream 95928 25990052 ~ 25998243 (+)
XLOC_025366 mcm5 coding downstream 105353 25999477 ~ 26011440 (+)
XLOC_025367 foxred2 coding downstream 125302 26019426 ~ 26032712 (+)
XLOC_025429 BX649540.1 misc downstream 4354615 30248739 ~ 30249036 (+)
XLOC_025356 NA non-coding upstream 136794 25700591 ~ 25720214 (+)
XLOC_025355 NA non-coding upstream 208633 25645231 ~ 25648375 (+)
XLOC_025371 NA non-coding downstream 182370 26076494 ~ 26080400 (+)
XLOC_025374 FP016144.1 non-coding downstream 300220 26194344 ~ 26194459 (+)
XLOC_025382 NA non-coding downstream 461170 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 517109 26411233 ~ 26416784 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00071780_00082031 NA coding CI01000034 null 71544 ~ 82031 (-)