XLOC_025367 (foxred2)


Basic Information

Item Value
gene id XLOC_025367
gene name foxred2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26019426 ~ 26032712 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050046
TGGAAGATGTTATGAAAACCGTGCTCTCGCAAAGATGTAGTTTACAAAATGCCTGCTGTTCATTTCCCTGTTTTCGGCTACTGAAGGATTGCAGCAGGAGCTGTAGTTGACGGCCTCATGAGTGTGATTCAGCTAGTCTTCAGGCTCCTGTGTGTCCTGGACCTGCTCCTGGCCGTGTCTGCTTCTGGTCTTCATGGTCGTAACCGCACACTGAGCCATGAGTACTGTGTGCTGGGAGCTGGACCCGCAGGCCTCCAGATGGGATACTTTCTGTCCAGGAGCCAGAGAGATTATATTATTCTGGAGAGAAACGCAGGACCAGGCAGCTTCTTCAACATatatCCTCGCCACAGAAAACTCATCAGCATTAACAAAATATACACAGGAAGGCGGAACAAGGAATTCAATCTGCGTCATGATTGGAACTCCCTGTTGAGTGACAGGCCTGACCTCCTGTTTCAGCGAATCAGCCGAAAGCTTTACCCGAGTGCTGATGACTTTCCACATTACCTCTCTTTGTTTGAGAAGGAACTGGGACTGAAGGTTAAATATGGCACTGATGTAGGGAGAATCAAAGCATCAGATTTTAATGGACACCAAGGCTACGTTCTGACTGATCAGAATGGTGTCAATTATCAGTGCAGGGTCCTGTTAGTGTCAACTGGTCTTTGGGTTCCTCAGGAGGTAGATTTTCGTGGCTCTGACCTGGTGGAGGGTTATGAGTCAATTCCCACTGATCCGGAGGAGTTTAAAGACCAGGCAGTGTTAATCCTTGGCAAAGGAAACTCCGCTTTTGAGACGGCGCAAAGCATCTTGGGTAGAGCAAGCCGGATCCACTTGTATAGTCCAAGCCCAGTACGACTCGCATGGCAGACTCACTACGTTGGGGATCTCCGAGCAGTGAATAATGAACTATTAGACACCTACCAGCTGAAATCTCTGGACGGTTTAGTAGAGGGAAGACTGGAGGATATTGCCATTGTCCGTAGAGCAAAAGATAGAGGGAAGAGAAGAGCGGCAAAGAAAAGAAATTCAACTTCGACAAAGAGAAATGAGCCACTGTATTTAACTCTTACTGAACTTCTTGATGACCAGAATGATACCAACATTTCAAACGTCACTGGTCAAAATCTGCCTGGTTATCACACCGATAACTTCTCACTCAGACAGCCGTATGACCGAGTGATCCGCTGCCTGGGCTTCCGTTTCAACTTCTCCATTTTTGATGGATCTGCACGTCCACCCCAAAGCAGCGGTGCCCGAGGTCGGTTGCCAGGGGTAACAGCTTGGTATGAAGGCAGAGGAACACCTAACATGTTTGTGTTGGGTATAGCTGCCCACTCCAGAGACTACCGCATGTCTGCTGGTGGGTTTATTCACGGATTTCGCTACACCGTGCGGGCTGTTCATAAAATCCTGGAGCAGCGTTATCATAACATTGCATGGCCCACTACAAACATACCCATCAGTCAGCTGCAGTCCTGGATACTGAGGAGGGTGAATGAAGCTTCTGGAACGTACCAGATGTTTGGGGTTCTTGGGGACATTATTTTACTGCAAGGGTCTCACTGTGAGTATCTGGAGGAGTTTCCTCTACAGGCCCTGCCCCAGCTGTCAGCTCTGTCTGGACGTTCCATCTCAGATCATGGTCTTCTGGTCTTGGTCATGCAGTATGGACTGAACCATACTGATACTCTTGGTCCGGGTCGGGCTGAGTCAGAATGGACCAAAGCCTGGAAGTCCAACTTCCTCCATCCGGTCTTGTACTACTACAAAACACTACCTACAGATAAAGATATGAGGCAGCGTCCAGTTGGCTGGCCACTACCAAGACCCGAGGCTGTTCATCACATGGTGGAGGACTTCCTGACTGAATGGGATCAACCGATATCTCACAGCCAACCTCTCAGACGCTTCCTGGAGCACTGCCTAAAGACTGACCTTCGGGCCTTTTATGCTGAATCCTGCTTCCTTCTGTCCCTCACCAGTCGTAATCCACCCCTCTTCTGCCGTCAAGGGTACTTGAGAAAGCAAGGCATCATGGGGAACCGTCACCTATGGCAACATGCCCGTGAGGCAGGACTCATGGAAGATGCTGCACTCAGTGAAGACGCATCAGTTCCTGAGTACCTGAATCACGCTGGCGCTGCAGTCATTTCAACAGTGAACTTTGACCTTTGAGGGACATTACATGAACGGTACCAAAGACTCAACACATTCTAGATTGTCTGCCTCTCACTCTTCATgaaatgtatgtacagtatgtcacaaaagtgagtacacccctacaatttctgcaaatatttattcatatcttttcataggacaacactgcagaaatgactctttgacacaatgaatagtagtcagtgtaaagtgtttatagcagtgtcaATTTATTGTCCTCTCAAAATAACTATAAATACAGCCAATAAGAGCTGAACCCCTGGCAACAAAAGTGAAAATGTGAAAATCAAGTAGTAATTTTTCTTTCCCTGTGTCATGTAACTCATTAGTGTTACACTGTCTCAGGTATCCACAGATAGCAGGTGGGTTAAATTGGGTATTGCTGCAGAGATTGAAGA
>TCONS_00050047
GAAGATGTTATGAAAACCGTGCTCTCGCAAAGATGTAGTTTACAAAATGCCTGCTGTTCATTTCCCTGTTTTCGGCTACTGAAGGATTGCAGCAGGAGCTGTAGTTGACGttctgtcccCAGGCCTCATGAGTGTGATTCAGCTAGTCTTCAGGCTCCTGTGTGTCCTGGACCTGCTCCTGGCCGTGTCTGCTTCTGGTCTTCATGGTCGTAACCGCACACTGAGCCATGAGTACTGTGTGCTGGGAGCTGGACCCGCAGGCCTCCAGATGGGATACTTTCTGTCCAGGAGCCAGAGAGATTATATTATTCTGGAGAGAAACGCAGGACCAGGCAGCTTCTTCAACATatatCCTCGCCACAGAAAACTCATCAGCATTAACAAAATATACACAGGAAGGCGGAACAAGGAATTCAATCTGCGTCATGATTGGAACTCCCTGTTGAGTGACAGGCCTGACCTCCTGTTTCAGCGAATCAGCCGAAAGCTTTACCCGAGTGCTGATGACTTTCCACATTACCTCTCTTTGTTTGAGAAGGAACTGGGACTGAAGGTTAAATATGGCACTGATGTAGGGAGAATCAAAGCATCAGATTTTAATGGACACCAAGGCTACGTTCTGACTGATCAGAATGGTGTCAATTATCAGTGCAGGGTCCTGTTAGTGTCAACTGGTCTTTGGGTTCCTCAGGAGGTAGATTTTCGTGGCTCTGACCTGGTGGAGGGTTATGAGTCAATTCCCACTGATCCGGAGGAGTTTAAAGACCAGGCAGTGTTAATCCTTGGCAAAGGAAACTCCGCTTTTGAGACGGCGCAAAGCATCTTGGGTAGAGCAAGCCGGATCCACTTGTATAGTCCAAGCCCAGTACGACTCGCATGGCAGACTCACTACGTTGGGGATCTCCGAGCAGTGAATAATGAACTATTAGACACCTACCAGCTGAAATCTCTGGACGGTTTAGTAGAGGGAAGACTGGAGGATATTGCCATTGTCCGTAGAGCAAAAGATAGAGGGAAGAGAAGAGCGGCAAAGAAAAGAAATTCAACTTCGACAAAGAGAAATGAGCCACTGTATTTAACTCTTACTGAACTTCTTGATGACCAGAATGATACCAACATTTCAAACGTCACTGGTCAAAATCTGCCTGGTTATCACACCGATAACTTCTCACTCAGACAGCCGTATGACCGAGTGATCCGCTGCCTGGGCTTCCGTTTCAACTTCTCCATTTTTGATGGATCTGCACGTCCACCCCAAAGCAGCGGTGCCCGAGGTCGGTTGCCAGGGGTAACAGCTTGGTATGAAGGCAGAGGAACACCTAACATGTTTGTGTTGGGTATAGCTGCCCACTCCAGAGACTACCGCATGTCTGCTGGTGGGTTTATTCACGGATTTCGCTACACCGTGCGGGCTGTTCATAAAATCCTGGAGCAGCGTTATCATAACATTGCATGGCCCACTACAAACATACCCATCAGTCAGCTGCAGTCCTGGATACTGAGGAGGGTGAATGAAGCTTCTGGAACGTACCAGATGTTTGGGGTTCTTGGGGACATTATTTTACTGCAAGGGTCTCACTGTGAGTATCTGGAGGAGTTTCCTCTACAGGCCCTGCCCCAGCTGTCAGCTCTGTCTGGACGTTCCATCTCAGATCATGGTCTTCTGGTCTTGGTCATGCAGTATGGACTGAACCATACTGATACTCTTGGTCCGGGTCGGGCTGAGTCAGAATGGACCAAAGCCTGGAAGTCCAACTTCCTCCATCCGGTCTTGTACTACTACAAAACACTACCTACAGATAAAGATATGAGGCAGCGTCCAGTTGGCTGGCCACTACCAAGACCCGAGGCTGTTCATCACATGGTGGAGGACTTCCTGACTGAATGGGATCAACCGATATCTCACAGCCAACCTCTCAGACGCTTCCTGGAGCACTGCCTAAAGACTGACCTTCGGGCCTTTTATGCTGAATCCTGCTTCCTTCTGTCCCTCACCAGTCGTAATCCACCCCTCTTCTGCCGTCAAGGGTACTTGAGAAAGCAAGGCATCATGGGGAACCGTCACCTATGGCAACATGCCCGTGAGGCAGGACTCATGGAAGATGCTGCACTCAGTGAAGACGCATCAGTTCCTGAGTACCTGAATCACGCTGGCGCTGCAGTCATTTCAACAGTGAACTTTGACCTTTGAGGGACATTACATGAACGGTACCAAAGACTCAACACATTCTAGATTGTCTGCCTCTCACTCTTCATgaaatgtatgtacagtatgtcacaaaagtgagtacacccctacaatttctgcaaatatttattcatatcttttcataggacaacactgcagaaatgactctttgacacaatgaatagtagtcagtgtaaagtgtttatagcagtgtcaATTTATTGTCCTCTCAAAATAACTATAAATACAGCCAATAAGAGCTGAACCCCTGGCAACAAAAGTGAAAATGTGAAAATCAAGTAGTAATTTTTCTTTCCCTGTGTCATGTAACTCATTAGTGTTACACTGTCTCAGGTATCCACAGATAGCAGGTGGGTTAAATTGGGTATTGCTGCAGAGATTGAAGATATGGGAGGTCAGCCTGTCAGTGCTC

Function

symbol description
foxred2 Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human FOXRED2 (FAD dependent oxidoreductase domain containing 2).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1026 Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human FOXRED2 (FAD dependent oxidoreductase domain containing 2).

Ensembl:

ensembl_id ENSDARG00000061354

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050046 False 2585 mRNA 0.47 10 26019426 26032686
TCONS_00050047 True 2621 mRNA 0.47 10 26019428 26032712

Neighbor

gene id symbol gene type direction distance location
XLOC_025366 mcm5 coding upstream 7986 25999477 ~ 26011440 (+)
XLOC_025365 gcat coding upstream 21183 25990052 ~ 25998243 (+)
XLOC_025364 NA coding upstream 32482 25985339 ~ 25986944 (+)
XLOC_025363 tom1 coding upstream 80167 25907266 ~ 25939259 (+)
XLOC_025362 zgc:171844 coding upstream 125302 25857008 ~ 25894124 (+)
XLOC_025368 ankrd54 coding downstream 2838 26035550 ~ 26044759 (+)
XLOC_025369 hmgxb4a coding downstream 12257 26044969 ~ 26060047 (+)
XLOC_025370 si:dkeyp-69e1.8 coding downstream 31379 26064091 ~ 26070801 (+)
XLOC_025371 NA coding downstream 43782 26076494 ~ 26080400 (+)
XLOC_025372 atp2a1 coding downstream 48631 26081343 ~ 26157066 (+)
XLOC_025429 BX649540.1 misc downstream 4216027 30248739 ~ 30249036 (+)
XLOC_025360 FP101990.1 non-coding upstream 174098 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 265877 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 non-coding upstream 272508 25745636 ~ 25746918 (+)
XLOC_025356 NA non-coding upstream 299212 25700591 ~ 25720214 (+)
XLOC_025374 FP016144.1 non-coding downstream 161632 26194344 ~ 26194459 (+)
XLOC_025382 NA non-coding downstream 322582 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 378521 26411233 ~ 26416784 (+)
XLOC_025384 NA non-coding downstream 603108 26635820 ~ 26636398 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04244137_04250139 FOXRED2 coding CI01000034 null 4244137 ~ 4250593 (+)