G174672


Basic Information

Item Value
gene id G174672
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 832438 ~ 833076 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU198400
AATTGTGTTTAAAAGCACTGGATTGTGCGCTTACAACTTGACCGAAGAATGACACCTCTACGTAAGGATCTATGAGGGCTGTCGTGTCTCCAACAAAGGCTTTGGTCACATTGGCCATAATACTGGAGTTTATTCTGGGAAGACCTTCTGCTCGGTACACTATCACGTAAAACCGAGCCCATGGCCGTTCAGGGCTTAAGCCTTCAGGAAGCAGGAGGTGCTTATCTATCTGTTCCTCTGCATCACTGAACTTCTGGGACGGTAGTGCAACATCTCCCTTTCCTGACACGCTGATATCACACTTTAAGTGCCCTTTCACCCCTGTGCGGATGTCAGCGGGGTCTGTGAGCGTGGCCCACTTATTGATGAACCGATGGCCAGGTTGGGAGTAAACCGTCCCGACATCAATCTTGAACATTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU198400 True 420 lncRNA 0.49 3 832438 833076

Neighbor

gene id symbol gene type direction distance location
CI01000037_00808744_00809273 NA coding upstream 22565 808744 ~ 809873 (+)
CI01000037_00796721_00807196 NA coding upstream 25104 795352 ~ 807334 (+)
CI01000037_00784200_00785176 NA coding upstream 47262 783585 ~ 785176 (+)
CI01000037_00775538_00779866 NA coding upstream 52351 775538 ~ 780087 (+)
CI01000037_00729466_00733346 NA coding upstream 98328 729017 ~ 734110 (+)
CI01000037_00874555_00887437 NA coding downstream 41411 874487 ~ 888017 (+)
CI01000037_00987906_00988350 NA coding downstream 154830 987859 ~ 989246 (+)
CI01000037_01075201_01076456 NA coding downstream 240898 1073974 ~ 1076489 (+)
CI01000037_01098540_01104541 NA coding downstream 264996 1098072 ~ 1105186 (+)
CI01000037_01670886_01672687 TBA1A, TUBA1C, TUBA1B.L, TUBA8L3, TUBA4A, TUBA3E.L coding downstream 837810 1670886 ~ 1673145 (+)
G174671 NA non-coding upstream 575 830730 ~ 831863 (+)
G174670 NA non-coding upstream 3095 829073 ~ 829343 (+)
G174669 NA non-coding upstream 4298 827937 ~ 828140 (+)
G174668 NA non-coding upstream 4962 826896 ~ 827476 (+)
G174666 NA non-coding upstream 11522 820413 ~ 820916 (+)
G174673 NA non-coding downstream 329 833405 ~ 833851 (+)
G174674 NA non-coding downstream 15229 848305 ~ 848643 (+)
G174675 NA non-coding downstream 16813 849889 ~ 851482 (+)
G174676 NA non-coding downstream 19068 852144 ~ 852406 (+)
G174709 NA non-coding downstream 140897 973973 ~ 974288 (+)
CI01000037_00228809_00230442 NA other upstream 602042 228809 ~ 230730 (+)
G174949 NA other downstream 780800 1613876 ~ 1614274 (+)
CI01000037_01965864_01966433 COA5, CB064 other downstream 1132666 1965603 ~ 1966435 (+)
G176346 NA other downstream 2006684 2839760 ~ 2840053 (+)

Expression


Co-expression Network