XLOC_000911 (grtp1a)


Basic Information

Item Value
gene id XLOC_000911
gene name grtp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 184915 ~ 192033 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001448
GTCGAGCGCGCGCTGGATGTTACCGGTGCCGTTACCGGAGCGGCAGGTTGTTCAGCTGTCTGTCCCGCGGGAGAAGCGGAGCCATTACTGTGGCGGTGTGTGCGGGAAAAGTTTGTCTGCTCAGCGGCGTCCATGAGCGGTGAATGGAGGAGACCCGGAGCCCGgaggactgaacatggaggagCGCGACCGCACCGGGAGAACCGGCCAGCCGCAACACCGCATCAACCAGCCGAGCACTGCCAGAGAGAGAGCAAACAGtgtGGACGCGTACGGCTTCCAGCGCTCCGATGATTTCGACTACGAGACTCATGAGCAGCTGATGTCGGAGTATCTGGCGGTCCTGACCCGCCGCTCCATCAGATGGGCCAAACTGCTGCAGGGGCGGCGCCGTGTTGACCGTAACctgaaggtgaaGCGGTACGTGAGGAAGGGTGTCCTGAATGAGCACCGGCCGCTGGTGTGGATGGTGTGCAGTGGAGCGCAGGAGCAGATGGACAGAAACCCGGGATACTACCAGTCCCTGCTGGACACACACCACGAGCCCAAACTGGAGGAGAGCATCCGCACCGatctgcaCAGAACCTTCCCAGACAACATCTACTTCAGGAAGTCAGCGGAGCCGTGTCTGCAGAAGGCGCTGTATAACGTGCTGGTGGCGTACGGACATCATAATAAAGCAGTGGGGTACTGTCAGGGAATGAACTTCATCGCAGGTTACCTGATCCTGGTCAGTAAAGATGAGGAGACGTCCTTCTGGCTGATGGAGGCGCTGCTGAGCCGGATACTGCCAGaTTACTACACCCCGGCGATGCTGGGCCTGAAGACGGATCAGGAGGTGCTGGGGGAGCTGGTGCGGCTGAAGGCTCCTGCGGTCTGGAAGCTCATGCAGGATCAGGGTGTGATGTGGACTCTGGTGGTCTCGCGCTGGTTCATCTGCCTGTTCATCGACGTGCTGCCCGTGGAGACGGTGCTGCGCATCTGGGACTGCCTGTTCTACGAGGGCTCCAAGATCCTGTTCCGCGTGGCTCTGACTCTGATCCGACACCACCAGCAGGAGATCGCTGAGGCGCAGAACCTGCCGGACGTCTGTGAACGCTTCAAACGCATCACCAGAGGAGCCTTCGTGGAGGACTGCCACACTTTCATGCAGaAAATCTTCCAGGAGCCCGGCAGTCTCTCTATGGCCACTGTGTCGAAGCTGCGGGAAAGCTGCCGCGCTCGGATCATCGCTGACGAATCCTGAAACATTCCCTCTGATAGTCTGCACTAAAGAGTCTGTTTTAAAGACCTgtattttcttacatttatagaaagtgtgtgtgtgtgtagatgtagCATAAATCCTAGATGCTGGACTCTCTTTAAGCTCGAATGTCTCTAAGTTTCAGACCAATAATACTGTGAATTAAACCAACGGCTCGTGATGAGATCTAGACTGATGTTCTTCACACTACAGCTGTCGGGAGGTAGCCGCAGTAAGAGCACTAATGTCTTCAAGactgtttatttttaatacaggTCAGATTCTGCTGGAGAAACACTCGTGGATCATGATGCTCCTTTAAACTCATTTCCATTACAGCCACTTTATAAATCCTGCATAAGCACAACTGATATTTGTCTACAGAACTCATTTAATAAAGATAAAGATCTTGGCT
>TCONS_00001449
AAATTAATCGCGCGTGTTGTTGTCGGTCGCCGATGATGCGCGCGCGCTGAAGTTCGCGAGTTGTCGAGCGCGCGCTGGATGTTACCGGTGCCGTTACCGGAGCGGCAGGTTGTTCAGCTGTCTGTCCCGCGGGAGAAGCGGAGCCATTACTGTGGCGGTGTGTGCGGGAAAAGTTTGTCTGCTCAGCGGCGTCCATGAGCGGTGAATGGAGGAGACCCGGAGCCCGgaggactgaacatgGAAGCTCATGCAGGATCAGGGTGTGATGTGGACTCTGGTGGTCTCGCGCTGGTTCATCTGCCTGTTCATCGACGTGCTGCCCGTGGAGACGGTGCTGCGCATCTGGGACTGCCTGTTCTACGAGGGCTCCAAGATCCTGTTCCGCGTGGCTCTGACTCTGATCCGACACCACCAGCAGGAGATCGCTGAGGCGCAGAACCTGCCGGACGTCTGTGAACGCTTCAAACGCATCACCAGAGGAGCCTTCGTGGAGGACTGCCACACTTTCATGCAGaAAATCTTCCAGGAGCCCGGCAGTCTCTCTATGGCCACTGTGTCGAAGCTGCGGGAAAGCTGCCGCGCTCGGATCATCGCTGACGAATCCTGAAACATTCCCTCTGATAGTCTGCACTAAAGAGTCTGTTTTAAAGACCTgtattttcttacatttatagaaagtgtgtgtgtgtgtagatgtagCATAAATCCTAGATGCTGGACTCTCTTTAAGCTCGAATGTCTCTAAGTTTCAGACCAATAATACTGTGAATTAAACCAACGGCTCGTGATGAGATCTAGACTGATGTTCTTCACACTACAGCTGTCGGGAGGTAGCCGCAGTAAGAGCACTAATGTCTTCAAGactgtttatttttaatacaggTCAGATTCTGCTGGAGAAACACTCGTGGATCATGATGCTCCTTTAAACTCATTTCCATTACAGCCACTTTATAAATCCTGCATAAGCACAACTGATATTTGTCTACAGAACTCATTTAATAAAGATAAAGATCTTGGC
>TCONS_00002894
GAAGTTCGCGAGTTGTCGAGCGCGCGCTGGATGTTACCGGTGCCGTTACCGGAGCGGCAGGTTGTTCAGCTGTCTGTCCCGCGGGAGAAGCGGAGCCATTACTGTGGCGGTGTGTGCGGGAAAAGTTTGTCTGCTCAGCGGCGTCCATGAGCGGTGAATGGAGGAGACCCGGAGCCCGgaggactgaacatggaggagCGCGACCGCACCGGGAGAACCGGCCAGCCGCAACACCGCATCAACCAGCCGAGCACTGCCAGAGAGAGAGCAAACAGtgtGGACGCGTACGGCTTCCAGCGCTCCGATGATTTCGACTACGAGACTCATGAGCAGCTGATGTCGGAGTATCTGGCGGTCCTGACCCGCCGCTCCATCAGATGGGCCAAACTGCTGCAGGGGCGGCGCCGTGTTGACCGTAACctgaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaggagatCAGTCTAATAAAATTACTGCATCATCATCATTCAGATCTgatcaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcatgtatatatgtatgtgtgtttgtatgcgtgtgctcgtgtgtgtgtgtgtgtgtatatgtatgtgtgcatttgtgtgtgaatgcatgtgtgtatgcgtgtgtgtgtctgcagtgaaGCGGTACGTGAGGAAGGGTGTCCTGAATGAGCACCGGCCGCTGGTGTGGATGGTGTGCAGTGGAGCGCAGGA

Function

symbol description
grtp1a Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in hatching gland and polster. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2733 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in hatching gland and polster. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

Ensembl:

ensembl_id ENSDARG00000029936

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001448 False 1661 mRNA 0.54 8 184915 191971
TCONS_00001449 False 1021 mRNA 0.51 4 184916 192033
TCONS_00002894 True 758 lncRNA 0.56 2 189734 191985

Neighbor

gene id symbol gene type direction distance location
XLOC_000909 pcid2 coding downstream 27352 152007 ~ 157563 (-)
XLOC_000907 FP067451.1 coding downstream 37069 108285 ~ 147846 (-)
XLOC_000908 NA coding downstream 42796 141289 ~ 142119 (-)
XLOC_000906 gpa33a coding downstream 113392 65705 ~ 71523 (-)
XLOC_000905 si:zfos-1011f11.2 coding downstream 119898 60979 ~ 65017 (-)
XLOC_000912 dcun1d2b coding upstream 16148 208181 ~ 214911 (-)
XLOC_000913 gas6 coding upstream 120751 312784 ~ 338445 (-)
XLOC_000914 pros1 coding upstream 151259 343292 ~ 354166 (-)
XLOC_000915 rasa3 coding upstream 165485 357518 ~ 411331 (-)
XLOC_000916 METTL21C coding upstream 262282 454315 ~ 462165 (-)
XLOC_000927 NA non-coding upstream 586542 778575 ~ 779614 (-)
XLOC_000929 NA non-coding upstream 813904 1005937 ~ 1014866 (-)
XLOC_000930 CU611053.1 non-coding upstream 858908 1050941 ~ 1051057 (-)
XLOC_000931 NA non-coding upstream 951929 1143962 ~ 1253194 (-)
XLOC_000932 NA non-coding upstream 1099142 1291175 ~ 1315753 (-)

Expression


Co-expression Network