RNA id: TCONS_00001448


Basic Information

Item Value
RNA id TCONS_00001448
length 1661
RNA type mRNA
GC content 0.54
exon number 8
gene id XLOC_000911
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 184915 ~ 192033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGAGCGCGCGCTGGATGTTACCGGTGCCGTTACCGGAGCGGCAGGTTGTTCAGCTGTCTGTCCCGCGGGAGAAGCGGAGCCATTACTGTGGCGGTGTGTGCGGGAAAAGTTTGTCTGCTCAGCGGCGTCCATGAGCGGTGAATGGAGGAGACCCGGAGCCCGgaggactgaacatggaggagCGCGACCGCACCGGGAGAACCGGCCAGCCGCAACACCGCATCAACCAGCCGAGCACTGCCAGAGAGAGAGCAAACAGtgtGGACGCGTACGGCTTCCAGCGCTCCGATGATTTCGACTACGAGACTCATGAGCAGCTGATGTCGGAGTATCTGGCGGTCCTGACCCGCCGCTCCATCAGATGGGCCAAACTGCTGCAGGGGCGGCGCCGTGTTGACCGTAACctgaaggtgaaGCGGTACGTGAGGAAGGGTGTCCTGAATGAGCACCGGCCGCTGGTGTGGATGGTGTGCAGTGGAGCGCAGGAGCAGATGGACAGAAACCCGGGATACTACCAGTCCCTGCTGGACACACACCACGAGCCCAAACTGGAGGAGAGCATCCGCACCGatctgcaCAGAACCTTCCCAGACAACATCTACTTCAGGAAGTCAGCGGAGCCGTGTCTGCAGAAGGCGCTGTATAACGTGCTGGTGGCGTACGGACATCATAATAAAGCAGTGGGGTACTGTCAGGGAATGAACTTCATCGCAGGTTACCTGATCCTGGTCAGTAAAGATGAGGAGACGTCCTTCTGGCTGATGGAGGCGCTGCTGAGCCGGATACTGCCAGaTTACTACACCCCGGCGATGCTGGGCCTGAAGACGGATCAGGAGGTGCTGGGGGAGCTGGTGCGGCTGAAGGCTCCTGCGGTCTGGAAGCTCATGCAGGATCAGGGTGTGATGTGGACTCTGGTGGTCTCGCGCTGGTTCATCTGCCTGTTCATCGACGTGCTGCCCGTGGAGACGGTGCTGCGCATCTGGGACTGCCTGTTCTACGAGGGCTCCAAGATCCTGTTCCGCGTGGCTCTGACTCTGATCCGACACCACCAGCAGGAGATCGCTGAGGCGCAGAACCTGCCGGACGTCTGTGAACGCTTCAAACGCATCACCAGAGGAGCCTTCGTGGAGGACTGCCACACTTTCATGCAGaAAATCTTCCAGGAGCCCGGCAGTCTCTCTATGGCCACTGTGTCGAAGCTGCGGGAAAGCTGCCGCGCTCGGATCATCGCTGACGAATCCTGAAACATTCCCTCTGATAGTCTGCACTAAAGAGTCTGTTTTAAAGACCTgtattttcttacatttatagaaagtgtgtgtgtgtgtagatgtagCATAAATCCTAGATGCTGGACTCTCTTTAAGCTCGAATGTCTCTAAGTTTCAGACCAATAATACTGTGAATTAAACCAACGGCTCGTGATGAGATCTAGACTGATGTTCTTCACACTACAGCTGTCGGGAGGTAGCCGCAGTAAGAGCACTAATGTCTTCAAGactgtttatttttaatacaggTCAGATTCTGCTGGAGAAACACTCGTGGATCATGATGCTCCTTTAAACTCATTTCCATTACAGCCACTTTATAAATCCTGCATAAGCACAACTGATATTTGTCTACAGAACTCATTTAATAAAGATAAAGATCTTGGCT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2733 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in hatching gland and polster. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

Ensembl:

ensembl_id ENSDART00000164091

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003287 lncRNA downstream 27361 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA downstream 27361 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001446 lncRNA downstream 27382 155770 ~ 157533 (-) True XLOC_000909
TCONS_00003288 lncRNA downstream 27384 154086 ~ 157531 (-) False XLOC_000909
TCONS_00001445 lncRNA downstream 27384 154613 ~ 157531 (-) False XLOC_000909
TCONS_00002895 lncRNA upstream 7555 199526 ~ 201194 (-) False XLOC_000910
TCONS_00002896 lncRNA upstream 17158 209129 ~ 210813 (-) True XLOC_000912
TCONS_00001454 lncRNA upstream 151646 343617 ~ 345895 (-) False XLOC_000914
TCONS_00001463 lncRNA upstream 287836 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001467 lncRNA upstream 319800 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001440 mRNA downstream 27352 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA downstream 28540 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001435 mRNA downstream 113392 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001450 mRNA upstream 8323 200294 ~ 206208 (-) True XLOC_000910
TCONS_00001451 mRNA upstream 16210 208181 ~ 214911 (-) False XLOC_000912
TCONS_00001452 mRNA upstream 120813 312784 ~ 338445 (-) True XLOC_000913
TCONS_00001453 mRNA upstream 151321 343292 ~ 354166 (-) False XLOC_000914
TCONS_00001455 mRNA upstream 158869 350840 ~ 354115 (-) True XLOC_000914
TCONS_00001442 other downstream 31069 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 135080 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 140369 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001460 other upstream 275772 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 429054 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 858970 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1121634 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1678890 1870861 ~ 1875118 (-) False XLOC_000939

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06233485_06239858.mRNA True 1908 mRNA 0.48 7 CI01000299 6232572 ~ 6239902 (+)