RNA id: TCONS_00002895


Basic Information

Item Value
RNA id TCONS_00002895
length 552
lncRNA type sense_over
GC content 0.55
exon number 2
gene id XLOC_000910
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 160302 ~ 206208 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCGGCCTCCATCAGGATCTGGACAGGAGAGAGAAACTGCAGGACCTGGGAGAGCGACTGTACCGAGCAGCGGCGCTAGAGAAAGCACAGAGAGACGGACGGCGGATCTCCATCACTTCAACTCTGGATCTGAAATCTGTCAAACAGCTGATCCTGGATCGATCTACACACCCGAAAATCAGAGGAATCCTGGAGGATCTGCTGCTTTACCAAGCCGGAGATCCTCCAAACCCTGTTTCAGCATCTCAGGAGTCTCCGAGGGTCAGTCCACGGCTCAGCGCGTTCCAGCTGCTCAGATCCAAGTTCCTGAAGAGTTCGCAGAAGCCCGGGGTCAGCCGCAGGAGAGAAGTGGGCTCTCTGAATGTCAAGGAGCGCCAGATTAAAGACACACACACGCTGAGAGCCAACGCAAGAGCTGGAATGAAGAGAAAAGCCTCACGTGTTCAGGACATGCTGGAGAAATTTGCAGCACTGGAGAAAAAGGACATGAAGAAACAGACGCAGCGGTGCAGCGGCGGAGACAGTGCGTTCAGCAGCATCATCAAGGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002894 lncRNA downstream 7541 189734 ~ 191985 (-) True XLOC_000911
TCONS_00003287 lncRNA downstream 41972 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA downstream 41972 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001446 lncRNA downstream 41993 155770 ~ 157533 (-) True XLOC_000909
TCONS_00003288 lncRNA downstream 41995 154086 ~ 157531 (-) False XLOC_000909
TCONS_00002896 lncRNA upstream 7935 209129 ~ 210813 (-) True XLOC_000912
TCONS_00001454 lncRNA upstream 142423 343617 ~ 345895 (-) False XLOC_000914
TCONS_00001463 lncRNA upstream 278613 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001467 lncRNA upstream 310577 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001475 lncRNA upstream 419796 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001449 mRNA downstream 7493 184916 ~ 192033 (-) False XLOC_000911
TCONS_00001448 mRNA downstream 7555 184915 ~ 191971 (-) False XLOC_000911
TCONS_00001440 mRNA downstream 41963 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA downstream 43151 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001435 mRNA downstream 128003 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001451 mRNA upstream 6987 208181 ~ 214911 (-) False XLOC_000912
TCONS_00001452 mRNA upstream 111590 312784 ~ 338445 (-) True XLOC_000913
TCONS_00001453 mRNA upstream 142098 343292 ~ 354166 (-) False XLOC_000914
TCONS_00001455 mRNA upstream 149646 350840 ~ 354115 (-) True XLOC_000914
TCONS_00001456 mRNA upstream 156324 357518 ~ 411331 (-) True XLOC_000915
TCONS_00001442 other downstream 45680 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 149691 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 154980 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001460 other upstream 266549 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 419831 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 849747 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1112411 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1669667 1870861 ~ 1875118 (-) False XLOC_000939

Expression Profile

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