XLOC_009190 (sdhdb)


Basic Information

Item Value
gene id XLOC_009190
gene name sdhdb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21684435 ~ 21692630 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018079
AGTGAGTGTTTGTTTGTACATCCGGGTGATTCCAGTGACCTTGGGTTGGTTGTAAGAATCATGGCGGCTCTCGTCCGAATAAGTTCTCTCTGTCATAGAGGTGTCAGCCCTCTGTTATTTCGCCCTTCGTCTCTCATCAGACCTTTGGCCGTACAGCAGAAGGATCATGATTGTTCGTACTTGATATCAGCAAGGATACATGCTACTCCTTCCAACTATGcgGGTTCTGGGTCTAAAGCTGCAACCATGCACTGGACTGGAGAGCGGATCCTGAGCATAGCTCTTCTGAGCCTGGCACCTGTTGCGTATTTTTGCCCCAGCCCTGCTGTTGACTACTCTTTAGCAGCTGCACTTACTCTACATGGTCACtgGGGTCTTGGCCAGGTTGTGACAGACTATGTTCACGGAGATGCTAAAATCAAGATGGCTAATGCAGGCCTGTTTGTTCTGTCCACTGTCACCTTCGCCGGCCTCTGCTACTTTAACTACCATGACGTGGGCATTTGCAAAGCGGTGGCCCTCTTGTGGAGTAAATGACTGGACTGAGACGAGGATCTGCGTTCACCATCAAAGTTCCAGCTTATTGTACATTATATGTAACTTCTATGAATATATAATTTTTGACAACATGGTGTCGATTTGCAGTTGTTATTAATTGTAAATGCTGTCAGAACATACTCAGCTTTTACGTAAGATGCGAAATCAGTGTTTCAGATGCGGAAAAACTTGTTGTGGCTTTAAGACGTTGAAAATCACTACGGTTGTAATGTTAAGATTCAAACTCATTTTTACAGGAAAAATGATCAGGCAATAAATGTTTTGGCCATATTTATTGTATAATGTCTTTTTGGTCACAATGAAATATCTTGACATCAGGGAAAGTAATGAATTATGGTAAATGACTCCTCGTGTAAACGGCACATTGTGTTTGTTGATTCACTGATGGTAAACTGATCTTTTATACACGCCAATCTGATTGTTGTAGAGATGCTTACATTTTCGCATGGCTTAATATATAGCAGGTATTAAACATTACCTATATTTATAAGTCCATCATTAATGAACAACATATGGGTTATTGTCATATTGACAGTATTTCAACGTAACACTTTGCATGGCTGTCTTGCTCAATTCTGCTCAAATAAGTAACCATTTATAAAAGACAATTTGTTATTGGATGtgcaatttatttacttttttgtcttAAATAGATTAGATGTTTGCAAAAATTATTGCAATGTTGTTTGCAGTAAACTGTGAGCTTTCAGTGTATAATAATGAAAAAGGCAAATCTAAATGATTAAAGTGAGTTTGGAATCTAAGGGAAATGATTTTGCTAGTCCTGTTATCATGCGCAGACATGGTTGTGAGGCTGGCTGCACTTGTGCCTGTTTAAACTGCTATGGAAATTTGTGTAAAATATTTTGGGTTTTTCTGCTCATTAAAGCTTAAAAGGGTAGAATTGTGCACtcaagaataaa

Function

symbol description
sdhdb Predicted to enable heme binding activity and ubiquinone binding activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Is expressed in female organism. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHD (succinate dehydrogenase complex subunit D).

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006121 mitochondrial electron transport, succinate to ubiquinone biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0046872 metal ion binding molecular_function
GO:0048039 ubiquinone binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-17 Predicted to enable heme binding activity and ubiquinone binding activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Is expressed in female organism. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHD (succinate dehydrogenase complex subunit D).

Ensembl:

ensembl_id ENSDARG00000030139

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018079 True 1481 mRNA 0.39 4 21684435 21692630

Neighbor

gene id symbol gene type direction distance location
XLOC_009189 bco2b coding downstream 5801 21673454 ~ 21678634 (-)
XLOC_009188 sorl1 coding downstream 14817 21541010 ~ 21669618 (-)
XLOC_009187 BX663519.1 coding downstream 144159 21521803 ~ 21540276 (-)
XLOC_009186 NA coding downstream 176899 21493852 ~ 21507536 (-)
XLOC_009185 NA coding downstream 314874 21355581 ~ 21369561 (-)
XLOC_009191 si:dkey-40g16.6 coding upstream 1758 21694388 ~ 21702317 (-)
XLOC_009192 sik2b coding upstream 87051 21779681 ~ 21837515 (-)
XLOC_009193 laynb coding upstream 150008 21842638 ~ 21852991 (-)
XLOC_009194 zgc:162608 coding upstream 182915 21875545 ~ 21877996 (-)
XLOC_009195 NA coding upstream 207676 21900306 ~ 21904226 (-)
XLOC_009180 CR626907.2 non-coding downstream 574827 21079826 ~ 21109608 (-)
XLOC_009178 BX548078.1 non-coding downstream 706187 20960069 ~ 20978248 (-)
XLOC_009198 NA non-coding upstream 468295 22160925 ~ 22161978 (-)
XLOC_009200 CR936967.1 non-coding upstream 568251 22260881 ~ 22260997 (-)
XLOC_009202 NA non-coding upstream 895874 22588504 ~ 22594885 (-)
XLOC_009203 CR388121.1 non-coding upstream 1028135 22720765 ~ 22720881 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04338747_04342064 SDHD misc CI01000072 null 4338719 ~ 4343266 (+)