XLOC_009194 (zgc:162608)


Basic Information

Item Value
gene id XLOC_009194
gene name zgc:162608
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21875545 ~ 21877996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018089
aattaaCTTTATCAGCAAAGAAACATGAATCTGCAGTTTATTACATTGGCTTTGGCCTTTGCTTCCACAGCAGGTTTGTAGTATTTCATACGTGATTTATTAGTTTTGATAGAATTTTTACAATGACTCATGAAACTGTATTTCTTTTCAGCATTTCCACTCAATGATGAGATCAGTCGAGATGCATGGAGTTTACAGAAAGACAATCAGGCCACTGACAAGAAGAATTTTGACAAAGACTCAAACTCTATGTGGAAGAACCATGTAGTGAGCAGTGACCTTTACTCTGAAGACTCTTACAACCCAATGGCAGCAGAACTGAGGCGCAAACTAAGCATGGAGTCTGAGCGGCTGAGGGCCCGTCTGAAGCAGGAGCTCGCCGAGCTGAGAGAAAGACTCTCTCCTTACCCCAGCCATCCCAAACACACTCTAGCCAATGTGAAAGAGTTCCTCGCCCCCTTTACCAAACAGCTCCAGACGGTTCTCCAATCCAACACTCAAAACCTTTGTGAGAAACTCAACCTGAACCTCCAGGAGCTGAACCCAGAGGATGCAGTGCTTTACCAGGAGGCTGTGCAAAAGATCACAACAGCTCTGGATGAAAGCCACCAGAAAAGAACAGCAGCCTTTGAGGACTTTAAAACGAAAGCATTCGAGGCTGTCGAGGAGGAAAGAGACAGCAGCGGAAAGGAACTATGGGAGGAAGTCACCGCCAGGCTTGGGCAAGAAGTTTGTACCTTTAGTTTAGAGGTACAAGGAAAAGTTGCTGCGCTCAAGATTGCTTTGATAGGCCATCTTGCGTCGGCACAGCCTCCAAGGGAAGTGATGGCTTCAAAGGTGGATCAGTTCTGCCAGAACTCTGCCACTAGGAATCAACAGTTTATTTCTAACTTGGACCAGCAGATGACAACGCTCCAAGAAAGCCAGAGCCATGGTGAGTCAACTGGTTTCCATCAGACAAACATTGAGTCCATACAGGAGGATTTCTCCACAAGACTCACAGCGCTGTTACAAGACATCGTACACACCCTAAATTAAACACATCTCCATTCCTGTCAGAAATACAACTGTAATGTATTGTAAATAACAACTGTTTTGTGATCTGTCGCTTTGTGTAAATATATTGTGGTTTGTACAGTTTTCAAAGAGAAATCTGAATGTTTTTGTGTGTAATATGTGTTGACATGCTGTTTTGGAAATAGTTAAGAAGATCAGTTTGTACGTATTTGAAATGAACATATATGTTGTCTGATGATTATTGCATCAACTTCTGTGTATTAATAAAAGTTTTTCTTTCTAAA
>TCONS_00018090
ATTTTCTCATCAACAGaattaaCTTTATCAGCAAAGAAACATGAATCTGCAGTTTATTACATTGGCTTTGGCCTTTGCTTCCACAGCAGGTTTGTAGTATTTCATACGTGATTTATTAGTTTTGATAGAATTTTTACAATGACTCATGAAACTGTATTTCTTTTCAGCATTTCCACTCAATGATGAGATCAGTCGAGATGCATGGAGTTTACAGAAAGACAATCAGGCCACTGACAAGAAGAATTTTGACAAAGACTCAAACTCTATGTGGAAGAACCATGTAGTGAGCAGTGACCTTTACTCTGAAGACTCTTACAACCCAATGGCAGCAGAACTGAGGCGCAAACTAAGCATGGAGTCTGAGCGGCTGAGGGCCCGTCTGAAGCAGGAGCTCGCCGAGCTGAGAGAAAGACTCTCTCCTTACCCCAGCCATCCCAAACACACTCTAGCCAATGTGAAAGAGTTCCTCGCCCCCTTTACCAAACAGCTCCAGACGGTTCTCCAATCCAACACTCAAAACCTTTGTGAGAAACTCAACCTGAACCTCCAGGAGCTGAACCCAGAGGATGCAGTGCTTTACCAGGAGGCTGTGCAAAAGATCACAACAGCTCTGGATGAAAGCCACCAGAAAAGAACAGCAGCCTTTGAGGACTTTAAAACGAAAGCATTCGAGGCTGTCGAGGAGGAAAGAGACAGCAGCGGAAAGGAACTATGGGAGGAAGTCACCGCCAGGCTTGGGCAAGAAGTTTGTACCTTTAGTTTAGAGGTACAAGGAAAAGTTGCTGCGCTCAAGATTGCTTTGATAGGCCATCTTGCGTCGGCACAGCCTCCAAGGGAAGTGATGGCTTCAAAGGTGGATCAGTTCTGCCAGAACTCTGCCACTAGGAATCAACAGTTTATTTCTAACTTGGACCAGCAGATGACAACGCTCCAAGAAAGCCAGAGCCATGGTGAGTCAACTGGTTTCCATCAGACAAACATTGAGTCCATACAGGAGGATTTCTCCACAAGACTCACAGCGCTGTTACAAGACATCGTACACACCCTAAATTAAACACATCTCCATTCCTGTCAGAAATACAACTGTAATGTATTGTAAATAACAACTGTTTTGTGATCTGTCGCTTTGTGTAAATATATTGTGGTTTGTACAGTTTTCAAAGAGAAATCTGAATGTTTTTGTGTGTAATATGTGTTGACATGCTGTTTTGGAAATAGTTAAGAAGATCAGTTTGTACGTATTTGAAATGAACATATATGTTGTCTGATGATTATTGCATCAACTTCTGTGTATTAATAAAAGTTTTTCTTTC
>TCONS_00018091
ACTCGATGACGTTTGAGTCATTGACAGCCAATAATATTTTTAACTGATGTATCtaactaaatgtaaattttctgttttgtttttagaattaaCTTTATCAGCAAAGAAACATGAATCTGCAGTTTATTACATTGGCTTTGGCCTTTGCTTCCACAGCAGCATTTCCACTCAATGATGAGATCAGTCGAGATGCATGGAGTTTACAGAAAGACAATCAGGCCACTGACAAGAAGAATTTTGACAAAGACTCAAACTCTATGTGGAAGAACCATGTAGTGAGCAGTGACCTTTACTCTGAAGACTCTTACAACCCAATGGCAGCAGAACTGAGGCGCAAACTAAGCATGGAGTCTGAGCGGCTGAGGGCCCGTCTGAAGCAGGAGCTCGCCGAGCTGAGAGAAAGACTCTCTCCTTACCCCAGCCATCCCAAACACACTCTAGCCAATGTGAAAGAGTTCCTCGCCCCCTTTACCAAACAGCTCCAGACGGTTCTCCAATCCAACACTCAAAACCTTTGTGAGAAACTCAACCTGAACCTCCAGGAGCTGAACCCAGAGGATGCAGTGCTTTACCAGGAGGCTGTGCAAAAGATCACAACAGCTCTGGATGAAAGCCACCAGAAAAGAACAGCAGCCTTTGAGGACTTTAAAACGAAAGCATTCGAGGCTGTCGAGGAGGAAAGAGACAGCAGCGGAAAGGAACTATGGGAGGAAGTCACCGCCAGGCTTGGGCAAGAAGTTTGTACCTTTAGTTTAGAGGTACAAGGAAAAGTTGCTGCGCTCAAGATTGCTTTGATAGGCCATCTTGCGTCGGCACAGCCTCCAAGGGAAGTGATGGCTTCAAAGGTGGATCAGTTCTGCCAGAACTCTGCCACTAGGAATCAACAGTTTATTTCTAACTTGGACCAGCAGATGACAACGCTCCAAGAAAGCCAGAGCCATGGTGAGTCAACTGGTTTCCATCAGACAAACATTGAGTCCATACAGGAGGATTTCTCCACAAGACTCACAGCGCTGTTACAAGACATCGTACACACCCTAAATTAAACACATCTCCATTCCTGT
>TCONS_00018092
GCAAAATAGCTTTAAGTTCCTAACGCCTGCCGTTATCAAAGTGACCCTCCACGTGGTCTGTGTTGACACAGATGAGAAGCAGGACAACCTCTGATAAGGGACTGCTTTAAAAGTAGACCCTGAGAAAGAAACTCTCATTTTCTCATCAACAGaattaaCTTTATCAGCAAAGAAACATGAATCTGCAGTTTATTACATTGGCTTTGGCCTTTGCTTCCACAGCAGCATTTCCACTCAATGATGAGATCAGTCGAGATGCATGGAGTTTACAGAAAGACAATCAGGCCACTGACAAGAAGAATTTTGACAAAGACTCAAACTCTATGTGGAAGAACCATGTAGTGAGCAGTGACCTTTACTCTGAAGACTCTTACAACCCAATGGCAGCAGAACTGAGGCGCAAACTAAGCATGGAGTCTGAGCGGCTGAGGGCCCGTCTGAAGCAGGAGCTCGCCGAGCTGAGAGAAAGACTCTCTCCTTACCCCAGCCATCCCAAACACACTCTAGCCAATGTGAAAGAGTTCCTCGCCCCCTTTACCAAACAGCTCCAGACGGTTCTCCAATCCAACACTCAAAACCTTTGTGAGAAACTCAACCTGAACCTCCAGGAGCTGAACCCAGAGGATGCAGTGCTTTACCAGGAGGCTGTGCAAAAGATCACAACAGCTCTGGATGAAAGCCACCAGAAAAGAACAGCAGCCTTTGAGGACTTTAAAACGAAAGCATTCGAGGCTGTCGAGGAGGAAAGAGACAGCAGCGGAAAGGAACTATGGGAGGAAGT

Function

symbol description
zgc:162608 Predicted to enable cholesterol binding activity; phosphatidylcholine-sterol O-acyltransferase activator activity; and phospholipid binding activity. Predicted to be involved in several processes, including lipid homeostasis; lipid transport; and plasma lipoprotein particle organization. Predicted to be part of chylomicron and high-density lipoprotein particle.

GO:

id name namespace
GO:0010873 positive regulation of cholesterol esterification biological_process
GO:0033700 phospholipid efflux biological_process
GO:0042157 lipoprotein metabolic process biological_process
GO:0046889 positive regulation of lipid biosynthetic process biological_process
GO:0006695 cholesterol biosynthetic process biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:0043691 reverse cholesterol transport biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0034372 very-low-density lipoprotein particle remodeling biological_process
GO:0034380 high-density lipoprotein particle assembly biological_process
GO:0033344 cholesterol efflux biological_process
GO:0042627 chylomicron cellular_component
GO:0034364 high-density lipoprotein particle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0060228 phosphatidylcholine-sterol O-acyltransferase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-86 Predicted to enable cholesterol binding activity; phosphatidylcholine-sterol O-acyltransferase activator activity; and phospholipid binding activity. Predicted to be involved in several processes, including lipid homeostasis; lipid transport; and plasma lipoprotein particle organization. Predicted to be part of chylomicron and high-density lipoprotein particle.

Ensembl:

ensembl_id ENSDARG00000069375

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018089 False 1301 mRNA 0.42 2 21875545 21877726
TCONS_00018090 False 1313 mRNA 0.42 3 21875549 21877860
TCONS_00018091 False 1064 mRNA 0.46 3 21875790 21877812
TCONS_00018092 True 781 mRNA 0.47 4 21876139 21877996

Neighbor

gene id symbol gene type direction distance location
XLOC_009193 laynb coding downstream 22554 21842638 ~ 21852991 (-)
XLOC_009192 sik2b coding downstream 38030 21779681 ~ 21837515 (-)
XLOC_009191 si:dkey-40g16.6 coding downstream 173228 21694388 ~ 21702317 (-)
XLOC_009190 sdhdb coding downstream 182915 21684435 ~ 21692630 (-)
XLOC_009189 bco2b coding downstream 196911 21673454 ~ 21678634 (-)
XLOC_009195 NA coding upstream 22310 21900306 ~ 21904226 (-)
XLOC_009196 drd2a coding upstream 168561 22046557 ~ 22074315 (-)
XLOC_009197 scn3b coding upstream 255843 22133839 ~ 22147860 (-)
XLOC_009198 NA coding upstream 282929 22160925 ~ 22161978 (-)
XLOC_009199 si:ch211-286b4.4 coding upstream 286553 22164549 ~ 22251089 (-)
XLOC_009187 BX663519.1 non-coding downstream 335269 21521803 ~ 21540276 (-)
XLOC_009186 NA non-coding downstream 368009 21493852 ~ 21507536 (-)
XLOC_009185 NA non-coding downstream 505984 21355581 ~ 21369561 (-)
XLOC_009180 CR626907.2 non-coding downstream 765937 21079826 ~ 21109608 (-)
XLOC_009178 BX548078.1 non-coding downstream 897297 20960069 ~ 20978248 (-)
XLOC_009200 CR936967.1 non-coding upstream 382885 22260881 ~ 22260997 (-)
XLOC_009202 NA non-coding upstream 710508 22588504 ~ 22594885 (-)
XLOC_009203 CR388121.1 non-coding upstream 842769 22720765 ~ 22720881 (-)

Expression


Co-expression Network