G183121


Basic Information

Item Value
gene id G183121
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 7427024 ~ 7428641 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU207948
GGGGGCTGGTGAAACAGAGGAATTTGGACTGAGGACTGTGGTGTGTCAGTGTTGATTTTTGCGGATGGAGTCTCTTATGGCCCTCCAGCAAATGTGGGGGTAGCTTATCAGAAGATGAATGTTCGTTTTCTCTTCTTGCCTTGTATACTTGATAGCTATATCTATAAAACTATGCAGAAAGAGACAGAGAAAGAAGAAAGAAAGAAATGAAATGAAAGAAAGCAATTGGGGGAGAGGCGTAGAGGAGTTTGTGCTGAGCAGTGTCAAGTCTGCAGCACAGGGCGTGGCCGTCGCCTTACCAGCCACTCCCAACCTCGTCTAAGCCCCTCCCCTATTCGCTGTCAGACATAGGCCGATTCGCTAGACTGGGTGCGGCCCAGGTTGGGCACAGATGAGAGGTGGGAAACATCCTTTTTCCGGATCTCACAAATGGACTTTCTGCGAGCCTGGACACCACGGATTGCCGCCTTAATCTTCCGCCAGCCCAGATGGTTGAGCTCTGCCAAGTTTAGGACCACGCAGATCCCGCTAACAGCAAACATAAACACCAGGAAAACTGTCTTCTCCGTGGGACGTGACACATAGCATTCGACCTCCTTCACGCAGGGGTAGCGATCACACTCAAACATGGCGGGAACGTTGAATCCATACAGGAAATACTGGCCAGCTAGAAAGCCAATTTCCAGAACGTTCCGGAACACCACCTGTATGACGTAAAAACGGGAGATGCCCTCCTGTTGACGAATCTTGGCACTTTTGGAGTACGTGACCCCCTGCGGAATGTTAGGAATGTCTTTTAAATCCAGACAGTCGCGGTCATCTTTGCTTTCCGGGTGCACCAGGATACCATTGATGTTGCGAAGCTTGCGGCTCGGTCCATGTCCATGGTCGATGTACGGGCCGTGCAGGAGGGTGTAACTGCGATCTTTGTGCTTGGCAGACTGGTGCACTGAGTAAGTGATAAAACAGAGGCTGGGCGTGCACACCAAGATGATCTGGAAAACCCAGTAACGGATATGGGAGATGGGGAAGGCTTTGTCGTAGCAGGCCTGGTTGCAACCTGGCTGCAGCGTGTTACAGATAAACATAATCTGTTCGTCCTCATACACCTTCTCTCCCACTATACCCACAATCAGGATCCGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU207948 True 1144 lncRNA 0.51 2 7427024 7428641

Neighbor

gene id symbol gene type direction distance location
CI01000039_07401817_07402410 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding downstream 24385 7400571 ~ 7402639 (-)
CI01000039_07385848_07389331 KPTN coding downstream 36534 7384829 ~ 7390490 (-)
CI01000039_07320926_07323244 CKM, CKM.S, CKMA, CKM2 coding downstream 102371 7320717 ~ 7324653 (-)
CI01000039_07165860_07166458 RHOG, RHOGC coding downstream 260566 7164783 ~ 7166458 (-)
CI01000039_07141149_07162368 TAF1 coding downstream 264656 7140963 ~ 7162368 (-)
CI01000039_07450597_07454594 NA coding upstream 21167 7449808 ~ 7454630 (-)
CI01000039_07498583_07505779 NA coding upstream 69862 7498503 ~ 7506602 (-)
CI01000039_07523213_07573865 LRCH2 coding upstream 94556 7523197 ~ 7576151 (-)
CI01000039_07592640_07593317 NA coding upstream 163907 7592548 ~ 7595053 (-)
CI01000039_07619613_07632295 WDR44 coding upstream 190239 7618880 ~ 7632295 (-)
G182998 NA non-coding downstream 64875 7360936 ~ 7362149 (-)
G182997 NA non-coding downstream 70204 7354970 ~ 7356820 (-)
G183106 NA non-coding downstream 78283 7348437 ~ 7348741 (-)
G183103 NA non-coding downstream 84059 7342676 ~ 7342965 (-)
G183100 NA non-coding downstream 90897 7335638 ~ 7336127 (-)
G183135 NA non-coding upstream 34480 7463121 ~ 7465190 (-)
G183140 NA non-coding upstream 52992 7481633 ~ 7481993 (-)
G183142 NA non-coding upstream 55936 7484577 ~ 7484808 (-)
G183143 NA non-coding upstream 56478 7485119 ~ 7485485 (-)
G183150 NA non-coding upstream 67124 7495765 ~ 7496011 (-)
CI01000039_07134422_07137732 NA other downstream 289257 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 778448 6646544 ~ 6653449 (-)
G182827 NA other downstream 791824 6634547 ~ 6635200 (-)
G182771 NA other downstream 918591 6507955 ~ 6508433 (-)
G182470 NA other downstream 1790260 5636058 ~ 5636764 (-)
G183261 NA other upstream 543475 7972116 ~ 7975045 (-)

Expression


Co-expression Network