XLOC_009221 (rad1)


Basic Information

Item Value
gene id XLOC_009221
gene name rad1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23776417 ~ 23784600 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018132
ATGTAATAACATGCCTCTGTCAACTCAGTCCCAATCCGATGTTGACCAGTACATCCTGATAGCCAGTTTGGACAATGCAAGGAATCTGTCCAACATCCTAAAAGCCATCTCTTTCAAGGATCATGCCATCTTCAATGCAACACAGAATGGGTTGAAAGTCACAGTTGAGGACTCCAAATGCCTTCAGGCCAATGCATTCATTCAGGCTGACATCTTTCAAGAATACATCATCAAAGAGGATGCAGTTGGCTTTCAGGTTAACTTAACTGTTCTTCTCGATTGCCTCACCATCTTCGGGGGAAGCACAGTGCCAGgTGTGTGCACCGCCTTGAGAATGTGCTACAATGGATATGGATATCCACTAACTTTGTTCCTGGAAGAAGGTGGTGTGGTCACTGTATGCAAGATTAACACACAGGAGCCCGAGGAGCCCATAGACTTTGACTTTTGCAGTACAAACGTGACCAACAAGGTGATTCTGCAGTCGGACAGTCTTAAAGAGGCTTTCTCTGAGCTGGACATGACCAGTGAGGTTCTGCAGATTACCATGTCACCGAGCCATCCTTACTTCAGATTATCCACATTTGGTAATTCTGGAAATGCCCATTATGATTATCCCAAGGACTCAGACATGATGGAGCTGTTCCAGTGTACAAAAATACAGACCAACAGGTATAAGATGTCCCTGTTGAAACCGTCCACAAAAGCCTTGGCCCTGTCCTGTAAAGTGTCGGTCAGAACTGACAGTCGAGGCTTCCTCTCTCTACAGTATCTCGTGAGGAATGACGACGGTCAGATTTGTTTTGTGGAGTACTACTGCTGCCCGGATGAAGAAGTGGAGGAGGAATAGGTTCATGCATGATGATCTCCTTTTTTAGGTTTAATAATGTATATAGTTTGTCCTGCACTAAtgttatcatttattaaaaataaaatataaagtaatgtCATAAACCAAATAAACTTCTATCATTGAAGAGATAGTTCATCCTAAAAGAAAAATGTACTTtccaatttactcaccctcaagtgtttctgtttttaaaacataaaaagatattttgaagaatgttgaaaattaGTAGACAACTGGAATCTTCTAGTttccaagattttttttacaattttcagtTGCATTTAACTGAGGAAAGAAATTTAAATATGGTGGAACAAgttgaaagtgaatgaatgatgacagatTAATTATttagggtgaattatccctttaattagAAACATTCTATTAAGTTTGGACGATTCCCTGTGTGATCGGCAGGGGGCGCGAGGGAATTGTATGTTAGGCTTTTACTGGAGCAGCCTgatgttttaataaatatgaaatatatatgttaaaaatagACATGTTTTCAATTCTGCTTTTAGTATTCTCCTAAATATGTGTCTGTGTATTCACATTTTATGAATGTTCCAGCCCACAAAGTACAATTTCAATTGTTCCTTGTATATTTACAGTCATCTAAATGATTAGAATACAACAAATAAGTTAATCTGTTGTCTCAGCCTGTAAATGTTTAATGCGTCTTCATTTTCTTCCACGAACGCGTTGTGAGGCAAACAGGCGGCTTGATGTTGATTCCGGCTGAAAGACGGTCCCAGAACTGCGCGCGCTCGAGCGGCCGCCTCGCTCGCGACCAATCGCTTCTTCACTCGCAGCTGTTGAGGCAACACTGTTTCCGGGCAGAGGAGCATCACAGGAGCAAAACAAGCGCACTTCTGTCGCCCTCTCATCTCAGCGGGTTCCTGCCCTGATGCATGAGTTGCTCACTGAAGCTGCAGAGAAACCCGCCAGAAACAGGCCAGCTActgcaaattatacatttatatcgACACTCTTACAAATGAAGCTGCCAATGGTTCCATTAACAACTTTTACATTTATAAGGTTCATGAACATAAAAATGTTCTTTATTGCTGAAAATTATCATTTGGATTATGAAAATGGATATTTGAAGCGCTATTCAAAcccaaaaaggtttttttttatggcattactaaaaatcttgttttgtttttgcttctttctgccatctttatttttaagaatgatCAGCTCTGTTTAAGGCTACAACTAAGAATAAGGtgtgaaaaatgtcttaaatttcaaaaactgacttttaggccttaaaaagtcttaaattcacttaactattttgttgtaggtcttaaattatgttaaacaggtCTTTATTTTTCTGTGTCTAAGTTAAACTAcccaatcaccaataatccatctcaaAACTTTGACATGTGATTGGTGAAATGGAATGGAATAAATCTGAAAAATGcataattatttatcattattggctcagtatatttttttattacaaaattttaTCAGAAAGGACATAATAGGTTTATCAAAAGTGAAAGCAAAGACATTTAAACCGTCAAATCAGTTTTGACAAATGCTGTTCATTTGTGCTTTCTAAAAACCAAGAATAAAGTTGTtttagtttctaaaaaaaaaagttcaacatTGGAAATATTAAGAAGTTTTTTTGTGAACATATTGTAAGGATATCTGATCATGGAGACACTGAACACTAATAATGTAATGAGTAATCAGACTTAAAGTTCTTTGTCAAGCATTGCCATCACATGAGTcaatgacatattaaaatgtattatagaaaagcagtttttaaagttGTTATAGTAATtcccaatattattattattattaaaaaaaaatgcagcattgGTGAAAAACAagttcagaaaaataaaacaattaccgACCCCTTATCTTTGAGCATTAGTGTATGTTTACAGTACAGTCATATATTATAGCTACGCATGTGGGCTTATACTTTCCACATCTTGTAAGATAACCCAATTTTCCCTACATATGGAAAACAACAACAGATTCAGCAAAACCTACTAAAACATGTGAGGTTTCAACTTAAACGCACTGTACCACATCTAAGGCAACACTTaaggtgtaaatatatatatataaatatatatatatatatatatatgtatatatggttTGTTTGCATTGACAGTTCCATAAAGAGTCTTTAACACCACTGGAAGCTACtcgttacaaaaataaataaaaatgcagttgAGACAGTTTATTTGAATTTAGTCTAGCTGAATTGTTACATTATTTCCCCatgattaaaaatacaaaaagtacaattaaaaagtaaattataattatataaacgaTTAACATTTTATCAAGATCATGCAGAAGTGCGCTccttttgcgattgttttagaacttccaattcagaTGCCTATATGAGAGAAATGACAAGGGAtgataaacagcagaaaacagtcaaactacttgttcTGCAAACAAGTGTCTTcgtgactatacagacaaagcagaataatacaataaggaaatatcagttgcagcataaaaagctgtttttaactAAAATTTAGGACCTGTGAGGGGATAAACACTAGtaggatttttttctaatgtgAAAGGAAAAGATTTTACTGTCATCAAAGTATTCCAATTTACCTATttcagccacatattttaaataatgtatcaaaacaagcaaactggttttataggtgcacttttttcaacataacatttctaaacattgcTAAGTATATGCAATAATTCTCTCCAGGTGATTGTTCTCAccttaaataaattacttttaaacaaatgctattgtaaggaagataattaaactataGGCAAACAGAGTTAAACATTAAACTATTTGCTTAAAGTTTCTATTGAGGTGGATTGCTGTTGATTGGATGATTTCGGCCTGAATGAGTAGCTTTTTAAAGGCATAGGGAAATTaagatctgtttaaaatgatttaagacctacaacacaatatttcagtaaatttaagacttttgtaAGGCCTAACATTTAGTTTtaggaatttaagacattttaagaccccacggacaccctgtttaacatttaaaaatcaataaaagtgAATAACCCTGGATGTTTCGAGCCAAAAAGACTGCAATGGCTGCACCCACAAATAATGTCAATAGAGATGCCTTTCACATTTTAAGAGAGGAGTCCCTCACATTAGCATGATCACATCCAGGAGCAGATTTAGTGATTTAGTGGCCTTAAGCAATTCTAGCTATGAGGCCCAATAgtttgtactttaatttatttttaattgatttattttgctgtTATTTCTTACATCACTCAATCTCCTTTTCTGTATTTtgtcttaatgcaaaataatatgtaaagcatcctataaaatgtttcaaataatttgttttcttaaaatgaattcgcaactaaaataatttatatatatatatacatatatatatatatactgttttgtaatagttttaatgacattttattcaatattttactttttttttttttttttttttttttaaactaaatcttcACCTAGTTTGACTGCTGGACTACTTCATGATTGAGGGTGGGGGACATATTTGcgcaaaagtttaaaaaagtaaacttttttttttttttttacattgttaacaTCCTTGTCAttcaaaatatgatagaaaattatgttataaacttcccagtgatgggttgcagctggaaaggcatgggctatataaaacatatgctggatgagttgacggttcattccgctgtggcaacccctgaataataaagggaccaacccaaaaataaaataaatgaatgatgttatttttaatttataggtCCAGTTTTTACTtataggtatttatttggggccCCTCAGATTTCTTAGGGCTCTAAGCAgccgcttaccttgcttattggttaaatcagCCACTGATCACACCTCAGACTGTGCCATTAAAATCTTGCTTATTTAAGCCTTTTTTAAAAGGATTTTAACTCTGTAAATGAGCATCAAATCCCCCAGCTGCACTGACCGCTCAGACAGCATCCAACAACAGTGTCCAGCGTAACTAAGTAAACACTGCCCAGAGTATCATTTGATGCGGGCGAGCAACCTGATCCAGGGCATGGCTCAGAGCAGTGATGTCACGAGGATGGCATGACTTTGTGCTTTTTAAACACAAGCGCAGCGCTCGCTGATGAAGAGGGCGATCCTCTGCCCACTGCTCTGATAAACAGTCTTGACCTAGCAGTGAATCAGCCGGTGTCAGGTTCTGGCTTTTGTAAACTCAAACTGGCCAATGAGCAAACTGTTGTGACTCTCCAACAATTAGCAACAAGAGAACCCATGGGGGATGAAGAGGAGGTGCAGGGCTTTCAGAGCACAGACCCACACGGGACAGTGAGTCATCAGACTGTCTGTTACCTTAACTGTACACACTGACTGTGTGTGCACTGTATCCTACCTCTTGTACTTGAATGAAAGCTAATGGTTTTTAGGGttcttacactgaaaaaatggcatggaatgataaccgttttcaaggtttatTGTGGttaggaaaagtcaaggttttaaaaccaccaaaaaatTTGGATATACCGTTCCCAACTAaggttttttatgtgttgtaaagtaATCGTGTTTTGTaagctacactcaaaaaatatgtttgatgctgttcaaactacttatttaaattgagctaaaaaaaac
>TCONS_00018133
CTGCATCAGACCCATATGCGCGCGCGAGACAACTGATGGGAAGCTAAACTTAGTCAAAATCACAAGAAGAAGAGCTAATGGCAACAATTTAAGGGCGCCAAACTCTAAAATGATATTAATTTGTCATATTTCATATATCTAACAGATGTAATAACATGCCTCTGTCAACTCAGTCCCAATCCGATGTTGACCAGTACATCCTGATAGCCAGTTTGGACAATGCAAGGAATCTGTCCAACATCCTAAAAGCCATCTCTTTCAAGGATCATGCCATCTTCAATGCAACACAGAATGGGTTGAAAGTCACAGTTGAGGACTCCAAATGCCTTCAGGCCAATGCATTCATTCAGGCTGACATCTTTCAAGAATACATCATCAAAGAGGATGCAGTTGGCTTTCAGGTTAACTTAACTGTTCTTCTCGATTGCCTCACCATCTTCGGGGGAAGCACAGTGCCAGgTGTGTGCACCGCCTTGAGAATGTGCTACAATGGATATGGATATCCACTAACTTTGTTCCTGGAAGAAGGTGGTGTGGTCACTGTATGCAAGATTAACACACAGGAGCCCGAGGAGCCCATAGACTTTGACTTTTGCAGTACAAACGTGACCAACAAGGTGATTCTGCAGTCGGACAGTCTTAAAGAGGCTTTCTCTGAGCTGGACATGACCAGTGAGGTTCTGCAGATTACCATGTCACCGAGCCATCCTTACTTCAGATTATCCACATTTGGTAATTCTGGAAATGCCCATTATGATTATCCCAAGGACTCAGACATGATGGAGCTGTTCCAGTGTACAAAAATACAGACCAACAGGTATAAGATGTCCCTGTTGAAACCGTCCACAAAAGCCTTGGCCCTGTCCTGTAAAGTGTCGGTCAGAACTGACAGTCGAGGCTTCCTCTCTCTACAGTATCTCGTGAGGAATGACGACGGTCAGATTTGTTTTGTGGAGTACTACTGCTGCCCGGATGAAGAAGTGGAGGAGGAATAGGTTCATGCATGATGATCTCCTTTTTTAGGTTTAATAATGTATATAGTTTGTCCTGCACTAAtgttatcatttattaaaaataaaatataaagtaatgtCATAAACCAAATAAACTTCTATCATTGAAGAGATAGTTCATCCTAAAAGAAAAATGTACTTtccaatttactcaccctcaagtgtttctgtttttaaaacataaaaagatattttgaagaatgttgaaaattaGTAGACAACTGGAATCTTCTAGTttccaagattttttttacaattttcagtTGCATTTAACTGAGGAAAGAAATTTAAATATGGTGGAACAAgttgaaagtgaatgaatgatgacagatTAATTATttagggtgaattatccctttaattagAAACATTCTATTAAGTTTGGACGATTCCCTGTGTGATCGGCAGGGGGCGCGAGGGAATTGTATGTTAGGCTTTTACTGGAGCAGCCTgatgttttaataaatatgaaatatatatgttaaaaatagACATGTTTTCAATTCTGCTTTTAGTATTCTCCTAAATATGTGTCTGTGTATTCACATTTTATGAATGTTCCAGCCCACAAAGTACAATTTCAATTGTTCCTTGTATATTTACAGTCATCTAAATGATTAGAATACAACAAATAAGTTAA

Function

symbol description
rad1 Predicted to enable 3'-5' exonuclease activity. Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD1 (RAD1 checkpoint DNA exonuclease).

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030896 checkpoint clamp complex cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-1873 Predicted to enable 3'-5' exonuclease activity. Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD1 (RAD1 checkpoint DNA exonuclease).

Ensembl:

ensembl_id ENSDARG00000040559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018132 False 5588 mRNA 0.35 5 23776417 23783822
TCONS_00018133 True 1653 mRNA 0.39 6 23780497 23784600

Neighbor

gene id symbol gene type direction distance location
XLOC_009220 bbc3 coding downstream 14837 23745217 ~ 23761580 (-)
XLOC_009219 zc3h4 coding downstream 54799 23709329 ~ 23721618 (-)
XLOC_009218 zgc:154093 coding downstream 76680 23693514 ~ 23699737 (-)
XLOC_009217 ercc2 coding downstream 84058 23680018 ~ 23692359 (-)
XLOC_009216 ckmb coding downstream 129339 23643718 ~ 23647078 (-)
XLOC_009222 tmem97 coding upstream 5457 23790057 ~ 23793641 (-)
XLOC_009223 si:ch211-167j9.5 coding upstream 22895 23807495 ~ 23814330 (-)
XLOC_009224 usp32 coding upstream 32345 23816945 ~ 23908779 (-)
XLOC_009225 appbp2 coding upstream 137664 23922264 ~ 23942861 (-)
XLOC_009226 pipox coding upstream 365490 24150090 ~ 24178893 (-)
XLOC_009205 NA non-coding downstream 622157 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 non-coding downstream 821285 22955017 ~ 22955132 (-)
XLOC_009203 CR388121.1 non-coding downstream 1055536 22720765 ~ 22720881 (-)
XLOC_009202 NA non-coding downstream 1181532 22588504 ~ 22594885 (-)
XLOC_009200 CR936967.1 non-coding downstream 1515420 22260881 ~ 22260997 (-)
XLOC_009227 CU313324.1 non-coding upstream 374353 24158953 ~ 24159067 (-)
XLOC_009228 NA non-coding upstream 777221 24561821 ~ 24563061 (-)
XLOC_009230 NA non-coding upstream 807725 24592325 ~ 24618905 (-)
XLOC_009234 NA non-coding upstream 1116951 24901551 ~ 24927093 (-)
XLOC_009236 NA non-coding upstream 1183492 24968092 ~ 24974112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03115987_03118683 RAD1 coding CI01000072 null 3115987 ~ 3118715 (+)